NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114968_10012926

Scaffold Ga0114968_10012926


Overview

Basic Information
Taxon OID3300009155 Open in IMG/M
Scaffold IDGa0114968_10012926 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5947
Total Scaffold Genes20 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (25.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (40.00%)
Associated Families5

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F016774Metagenome / Metatranscriptome244Y
F027756Metagenome / Metatranscriptome193N
F032548Metagenome / Metatranscriptome179Y
F049419Metagenome / Metatranscriptome146Y
F064403Metagenome / Metatranscriptome128N

Sequences

Protein IDFamilyRBSSequence
Ga0114968_1001292611F049419N/AMKLPKLDLLDLATTYIFFGLIYGTIVTLTWNYLFEPITFIHLSILQGFGIHLIARILFGNTNTNYISNFYSQKTPDLDKIDSYLKEIQADLDKEADEVERQYEDLDKKD*
Ga0114968_1001292617F016774N/AMPPKKSKIEFLTEHLASLNHWRDQLLALEKSYYSKDTEKERTCRNMLNKYLDDVLAYNKNIKEKPKNKV*
Ga0114968_100129263F027756GAGMKLKDLIDRKILYLNFPINRHSIQEGKVTEISPAEKCIKINNDWHLISNIRIIELFSEKERPTLGFN*
Ga0114968_100129264F032548N/AMKHNQEMEKAIRLLEELVNQADEDCPQDCRTMHFVNALEEASEFIMEYKNTK*
Ga0114968_100129266F064403GGAMINPRAKILSDLKRAYLKEHPVSLVDRILGYLNNLTDFQLCQLYSEKYETNPKYIAEQFEFNF*
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