 |
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300009155 Open in IMG/M |
| Scaffold ID | Ga0114968_10004500 Open in IMG/M |
| Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 10391 |
| Total Scaffold Genes | 21 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (57.14%) |
| Novel Protein Genes | 3 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (66.67%) |
| Associated Families | 3 |
| Taxonomy | |
|---|---|
| All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Lake Montjoie, Canada | |||||||
| Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 3 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F015584 | Metagenome | 253 | Y |
| F026555 | Metagenome | 197 | N |
| F033425 | Metagenome / Metatranscriptome | 177 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114968_100045001 | F015584 | N/A | DGFQLLNLTTITSVSGGTAGQTTAQRITSLLDAGEWPGGMRDISTTATTTVQADDGSSRSLLSACQVTEATDLGAFWMDQRGYAKFYSRNDIIVAEGGTVTKFSDVPGSGDITYQAVEFDISDYQMINKVTVTPNGLSGQTASDSASIDDYFQHSRVRSGIMQTELDALNQAKMIIASRKEQGVNIQLNSLTVDAYGSNDPSRVIAALNLDIFDPIEVTQTLPAGNVVTDSVIAGLTYQITPKSFMVTFSCAQPFAVGFLLDSTIDGKLDEDSLAY* |
| Ga0114968_1000450017 | F026555 | AGGA | MAYASAPVVDALITLSIKIMAKFDYHKAMREGHGYNLYIADLLQHFGVPKVDVPEFSIATTHNQIRDKTLNEKDVIVDGLVLEVKSSSRSFTNADDFPFNPVMIDTVSGFDSKIIKPFAYVMISQITQGIFVIPTATKYDWTIRTYFDADREIEERFYMTKKRHCRPFIEMVDLLLERANERTNQM* |
| Ga0114968_1000450021 | F033425 | GAGG | MAIVSSQVTVTTTSQSIISVDNVSRDVLLHAKHDLVIGNSAVTSSNGYLLDNGDQVRLTLMDGEDLWAVCAVGSGTLHILVSKVD* |
| ⦗Top⦘ |
|
Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |