Scaffold Ga0114968_10002203

Overview

Basic Information

• Taxon OID: 3300009155
• Scaffold ID: Ga0114968_10002203
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 15005
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (56.52%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (33.33%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F012113	Metagenome / Metatranscriptome	283	Y
F025225	Metagenome	202	Y
F029043	Metagenome	189	Y
F049401	Metagenome	146	N
F093506	Metagenome	106	Y
F104721	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_1000220310	F025225	N/A	MADVINSKLGDVAITAIGTTYRSNSAQIASELERIVSSVKTKGIYKPIGVGKNGKIIKRKIGETKKFFARNESYAGTYKLVNWLLKNRGLATLGKTKIGVGGLGMGGKPTTIGHLARRLVAGRKRSVNYIRNGWAAAASVFGKKASLTRGDYSKQAIMRLGGGTKADNKKALMEGIIFNRAGDKDTRFYPVRKRAISGAVKIGGPGLAEAVQKVMKDMNVYLGRKNKESSDKIGL*
Ga0114968_1000220312	F093506	AGGA	MSATILSNITSFEYEPDITTDNGRDGISSFQFSVVGSFSALSSSFSLDENLSGVPDQPPGNFRVVRRNMSHIAGDTGTGLYRLEVSAEGGTGDNSLYVLETSYQYQKEIVSGFVQLPALDAAINYVCEWLSPTATITTNSQSEDITAVQNQVRAFVANLEVQVIRNKPSTTAIIGTVQYPVFGFGIDVNAINITGSSVEKAGGLYRVRASATKGQMQAIL*
Ga0114968_1000220316	F012113	N/A	MQQILTFIQSQDVFAWVGALVALLSAVIAIASLIPGDEPEATLTKIVSFLSKFSKK*
Ga0114968_1000220317	F049401	GAGG	LQELLGLFSGGLKIVLRQGRKEMMQRLNIAAGFVMLILIIGGGLVLSSCASTSYTYTAPSPADIPELIMEWDRLERTIGLVKPEFREQYAKALKALSNAIAEQERWRARAENK*
Ga0114968_100022034	F029043	N/A	MSKDEQAIKALQYLLDEGFISLGYIDGQPSVFLTTSLADAQKAILGLAKDSADWWK*
Ga0114968_100022038	F104721	N/A	MQEKILYTRNIKLASVLATFGIPFRETEPMAVIEDADNGNKRSVTFFFNDLPDGTGGRIIDLWEKGWGAITNLDDPLAYCRAVLENRERLLDAMNNATPLVRKQFGKATLLISKSASPELRRKLSKYL*