Basic Information | |
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Taxon OID | 3300009155 Open in IMG/M |
Scaffold ID | Ga0114968_10000282 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 37784 |
Total Scaffold Genes | 64 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 43 (67.19%) |
Novel Protein Genes | 13 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 7 (53.85%) |
Associated Families | 13 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Montjoie, Canada | |||||||
Coordinates | Lat. (o) | 45.4091 | Long. (o) | -72.0994 | Alt. (m) | Depth (m) | 3 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000635 | Metagenome / Metatranscriptome | 970 | Y |
F001459 | Metagenome / Metatranscriptome | 690 | Y |
F002009 | Metagenome / Metatranscriptome | 604 | Y |
F002826 | Metagenome / Metatranscriptome | 527 | Y |
F003304 | Metagenome | 494 | N |
F004760 | Metagenome / Metatranscriptome | 424 | N |
F007467 | Metagenome / Metatranscriptome | 350 | Y |
F007747 | Metagenome / Metatranscriptome | 345 | Y |
F010449 | Metagenome / Metatranscriptome | 303 | N |
F010603 | Metagenome / Metatranscriptome | 301 | Y |
F012569 | Metagenome / Metatranscriptome | 279 | N |
F014827 | Metagenome / Metatranscriptome | 259 | Y |
F104727 | Metagenome | 100 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114968_1000028211 | F004760 | AGGA | MPIYQYTDTRNGSVVELEKSVAERDSVPKYLKRFTVPQRLALVGVGDPLDNPLGSNKTNIMKGYYKQEQKLGSRFKSEFSADQVKRAWSRKGD* |
Ga0114968_1000028212 | F010603 | AGGAG | MANEFVRSTRKAKGKAIRFDTQGFTNVFEITASSSGGTVNTVATATASLNVTLNGTSYRIALHT* |
Ga0114968_1000028213 | F012569 | N/A | MSRALDKFQAQYGFSVGTTGTAPAGYWAIQMLSDTTFSAISGKYDGTLTGVTIGSGNIIYGEFDSYTAGTGKVIGYIAG* |
Ga0114968_1000028215 | F010449 | GGGGG | MSEEQVWNMEVRLARMEERQVQLYSMVERSLANYADIANKVNALEHLRTRILALSGVIGLICSMAWDVIKNRNN* |
Ga0114968_1000028217 | F000635 | AGAAG | MTITEIAQFAGEKIGKTDADTITFLQKSAALNYRRVWNFAPWRETVTNSTYAITDITSRTVALGTSVETPLSVAWGDNELTPMDLATIISQDADLLDIDRTGTPQAYYFKGRNTSGIAEIDVYPALDTTSTTTLKVIEKLQCLTRSNYVVDFPPTSNAIGDELRLPHVSHVVLALTHADALERERQYGKAQLVVQTANTDLASMANYELSQVGGMKQITPTSLGELGLEEII* |
Ga0114968_1000028227 | F007467 | N/A | MTEKEAWEYFDDGLKGAQSFDEAVEWVKKNQKMVKKLTMQAMIRKFDEDISHANKTWLN* |
Ga0114968_100002823 | F014827 | N/A | VLRAILEIIAAVFRIIPSWKQKRTQNFENEWRDNRKAIDSDLSGESWWLRNNDTNNKHDRDS* |
Ga0114968_1000028232 | F002009 | AGGAGG | MTAPTIQEMGNAAQEIVWRVMGKGSEKSGYGDWLEKDRPTHDYHIARAVRHLATAQMQLHKSTPCPDNNGETSVDHLERALVRSLFVLAQIKKEVPRL* |
Ga0114968_1000028236 | F007747 | N/A | MKLGKITFGKSRKAPKMVLVDVTYDDKTGAELFRIGMKLLKKDREAVIEYVIKKSLAYAIKK* |
Ga0114968_1000028237 | F003304 | N/A | MKQALVTQSFGDDWKKILDLTKPRMEEYCKRHSCDFILIDKPLTHPMQYSKSAIGNIMATKGYDQVTFVDADVLIAADCPKLSDDAGVFCAFDEGAYLDRKADMVKLASAFGGIIEPQFYVNTGVFVVHTKAVGILSMPPIGLHPNHFAEQTWLNVMAHLWKIPLTELDPSFNCMTSVEGHFGLDRYKDAYIIHYAGQSNDMVKLAGQIKEDDAKLKEAGR* |
Ga0114968_1000028243 | F002826 | GGA | MNMEAKNRLKWARDMLAIAREKLVLERNRATHGRSVDMIQIITMVDAASLVCKEVVGEE* |
Ga0114968_1000028256 | F104727 | N/A | MKNTKEKHYIAEVQEQHGEYEHTTKYLFKTAGDPLEYAEKVSKTWYGFEEPDSADNGGYWQNGEIISSVGEVKKVSLEHYNVLKKYLSVL* |
Ga0114968_100002827 | F001459 | GGGGG | MRRLRAIMAFIRHQEWVDEPKWEAEDERALTGFLGSLTGKKLGLILLNLTLRQNASAVEKEANSLAEACGYAKGFRGCVATIESLCSPKQNSPILDSRDGVDESAVN* |
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