NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114968_10000282

Scaffold Ga0114968_10000282


Overview

Basic Information
Taxon OID3300009155 Open in IMG/M
Scaffold IDGa0114968_10000282 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)37784
Total Scaffold Genes64 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)43 (67.19%)
Novel Protein Genes13 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)7 (53.85%)
Associated Families13

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Montjoie, Canada
CoordinatesLat. (o)45.4091Long. (o)-72.0994Alt. (m)Depth (m)3
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000635Metagenome / Metatranscriptome970Y
F001459Metagenome / Metatranscriptome690Y
F002009Metagenome / Metatranscriptome604Y
F002826Metagenome / Metatranscriptome527Y
F003304Metagenome494N
F004760Metagenome / Metatranscriptome424N
F007467Metagenome / Metatranscriptome350Y
F007747Metagenome / Metatranscriptome345Y
F010449Metagenome / Metatranscriptome303N
F010603Metagenome / Metatranscriptome301Y
F012569Metagenome / Metatranscriptome279N
F014827Metagenome / Metatranscriptome259Y
F104727Metagenome100Y

Sequences

Protein IDFamilyRBSSequence
Ga0114968_1000028211F004760AGGAMPIYQYTDTRNGSVVELEKSVAERDSVPKYLKRFTVPQRLALVGVGDPLDNPLGSNKTNIMKGYYKQEQKLGSRFKSEFSADQVKRAWSRKGD*
Ga0114968_1000028212F010603AGGAGMANEFVRSTRKAKGKAIRFDTQGFTNVFEITASSSGGTVNTVATATASLNVTLNGTSYRIALHT*
Ga0114968_1000028213F012569N/AMSRALDKFQAQYGFSVGTTGTAPAGYWAIQMLSDTTFSAISGKYDGTLTGVTIGSGNIIYGEFDSYTAGTGKVIGYIAG*
Ga0114968_1000028215F010449GGGGGMSEEQVWNMEVRLARMEERQVQLYSMVERSLANYADIANKVNALEHLRTRILALSGVIGLICSMAWDVIKNRNN*
Ga0114968_1000028217F000635AGAAGMTITEIAQFAGEKIGKTDADTITFLQKSAALNYRRVWNFAPWRETVTNSTYAITDITSRTVALGTSVETPLSVAWGDNELTPMDLATIISQDADLLDIDRTGTPQAYYFKGRNTSGIAEIDVYPALDTTSTTTLKVIEKLQCLTRSNYVVDFPPTSNAIGDELRLPHVSHVVLALTHADALERERQYGKAQLVVQTANTDLASMANYELSQVGGMKQITPTSLGELGLEEII*
Ga0114968_1000028227F007467N/AMTEKEAWEYFDDGLKGAQSFDEAVEWVKKNQKMVKKLTMQAMIRKFDEDISHANKTWLN*
Ga0114968_100002823F014827N/AVLRAILEIIAAVFRIIPSWKQKRTQNFENEWRDNRKAIDSDLSGESWWLRNNDTNNKHDRDS*
Ga0114968_1000028232F002009AGGAGGMTAPTIQEMGNAAQEIVWRVMGKGSEKSGYGDWLEKDRPTHDYHIARAVRHLATAQMQLHKSTPCPDNNGETSVDHLERALVRSLFVLAQIKKEVPRL*
Ga0114968_1000028236F007747N/AMKLGKITFGKSRKAPKMVLVDVTYDDKTGAELFRIGMKLLKKDREAVIEYVIKKSLAYAIKK*
Ga0114968_1000028237F003304N/AMKQALVTQSFGDDWKKILDLTKPRMEEYCKRHSCDFILIDKPLTHPMQYSKSAIGNIMATKGYDQVTFVDADVLIAADCPKLSDDAGVFCAFDEGAYLDRKADMVKLASAFGGIIEPQFYVNTGVFVVHTKAVGILSMPPIGLHPNHFAEQTWLNVMAHLWKIPLTELDPSFNCMTSVEGHFGLDRYKDAYIIHYAGQSNDMVKLAGQIKEDDAKLKEAGR*
Ga0114968_1000028243F002826GGAMNMEAKNRLKWARDMLAIAREKLVLERNRATHGRSVDMIQIITMVDAASLVCKEVVGEE*
Ga0114968_1000028256F104727N/AMKNTKEKHYIAEVQEQHGEYEHTTKYLFKTAGDPLEYAEKVSKTWYGFEEPDSADNGGYWQNGEIISSVGEVKKVSLEHYNVLKKYLSVL*
Ga0114968_100002827F001459GGGGGMRRLRAIMAFIRHQEWVDEPKWEAEDERALTGFLGSLTGKKLGLILLNLTLRQNASAVEKEANSLAEACGYAKGFRGCVATIESLCSPKQNSPILDSRDGVDESAVN*

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