Scaffold Ga0114968_10000254

Overview

Basic Information

• Taxon OID: 3300009155
• Scaffold ID: Ga0114968_10000254
• Source Dataset Name: Freshwater microbial communities from Lake Montjoie, Canada to study carbon cycling - M_130807_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 39456
• Total Scaffold Genes: 49
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 43 (87.76%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Montjoie, Canada
• Coordinates
  • Lat. (^o): 45.4091
  • Long. (^o): -72.0994
  • Depth (m): 3

Associated Families

Family	Category	Number of Sequences	3D Structure?
F037689	Metagenome	167	Y
F089837	Metagenome	108	Y
F096868	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114968_1000025411	F089837	N/A	MPQKLTRAQIKAGLDQVPIEQLLSSGEGKKPQLTHKQREFARALAMGQSKAQAYRVSHKANPAPSTIVTEPYKLARDPRITREVEAYKLAIEAEKHRTPAQLKALLVQQLVQHSIDEDFPPAQRMKALQLIGNLFEVGAFMERKETTVVHKSADIRARLLERLKDRPAAAASDVVDLLSEIKTPPALLGAAADPTPPGDPQEGPPAHGAHTHTVSLIQSSSKKDGVPPSEIVDVVSNFDKE*
Ga0114968_1000025418	F096868	AGG	MIKKMQAKYPGKCSLSGARINPGDFILYDTDTKRAQLEPDADTIQFTTTSPRVSDVFNFSGREFYRNKAGRCEDAPCCGCCTI*
Ga0114968_1000025440	F037689	AGGA	MTKDEKRSHAEWAKIYSQLNDALKSSIKDENNLRVVIDNLEEKVGKLEEQLTMSIGVIKYLELQIARSNTVRSNKDRA*