Scaffold Ga0114963_10026460

Overview

Basic Information

• Taxon OID: 3300009154
• Scaffold ID: Ga0114963_10026460
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3841
• Total Scaffold Genes: 16
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 7 (43.75%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032548	Metagenome / Metatranscriptome	179	Y
F044916	Metagenome / Metatranscriptome	153	Y
F049419	Metagenome / Metatranscriptome	146	Y
F064403	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114963_1002646010	F064403	GGAG	MINPRAKILSDLKIAYLKEHPITLVDRILGYLNNLTDFQLCQIYSEKYETNPKYMAEQFEFKF*
Ga0114963_1002646013	F032548	N/A	MKHNQEMEKAIKILEELVIQADEDCPHDCRTMHFVNALEEASEFIMEYKNTK*
Ga0114963_100264605	F049419	N/A	MKLPKLDLLDLATTYIFFGLIYGTIITLTWNYLFESVTFVHLSILQGFGMHLIARILFGNTNTNYISNFYSPKTPDLDKIDGYLKEIQADLDKEADEVEKQYEDLNKKD*
Ga0114963_100264609	F044916	N/A	MGNKKVEKSRIEKGLKKEEKTFALMAQKIIDAIKDEKELRAFAKISLEILYKDNPNLFSDHAKLKLKKK*