Scaffold Ga0114963_10018347

Overview

Basic Information

• Taxon OID: 3300009154
• Scaffold ID: Ga0114963_10018347
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4675
• Total Scaffold Genes: 17
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (29.41%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F032548	Metagenome / Metatranscriptome	179	Y
F034827	Metagenome / Metatranscriptome	173	Y
F044916	Metagenome / Metatranscriptome	153	Y
F049419	Metagenome / Metatranscriptome	146	Y
F064403	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114963_1001834710	F044916	N/A	MGKKKVEKSRIEKGLEKEEKTFALMAKKIIDAIKDEKELRAFAKISLEILYKDNPNLFADHAKLKLKKK*
Ga0114963_1001834714	F049419	N/A	MKLPKLDILDLLTTYIFFGLIYGTIVTLVWNYLFEPITFVHLSILQGFGIHLIARILFGNTNTNYISNFYSPKTPDLDKIDSYLKEIQADLDKEADEVEKQYEDLDKKD*
Ga0114963_100183472	F034827	N/A	MKYNITSQDKEALTEFDQIKEGEVFSFFDPESVQRGNHSIYMKIKVPNTTSVNILDLGDGKAYDFSAKKRNTINDPDEKQGNRVYKLNAKINIVVL*
Ga0114963_100183477	F032548	N/A	MKHNQEMEKAIKILEELVNQADEDCPQDCRTMHFVNALEEASQFIMEYKNAK*
Ga0114963_100183479	F064403	GGA	MTNPRSKILSDLKRAYLKEHPVSLVDRILGYLNNLTDFQLCQLYSEKYETNPKYIAEQFEFKF*