Scaffold Ga0114963_10003707

Overview

Basic Information

• Taxon OID: 3300009154
• Scaffold ID: Ga0114963_10003707
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 10471
• Total Scaffold Genes: 18
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 12 (66.67%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F049573	Metagenome	146	Y
F070923	Metagenome	122	Y
F082075	Metagenome	113	Y
F102439	Metagenome	101	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114963_100037073	F049573	N/A	MVMALPTGKTLISTADAAKILGVSMGRVRQLGILGAKKGGLTRYWAAPTALVFDEAEVKKVAADRPKTGKTGRPKGGFKAN*
Ga0114963_100037076	F082075	GAG	MPHVSLRFRLPDEQVEFTAALQGADAKSAIWQVDQYCRSILKHGEPSEETRRHLEEIREMLRERPGLLDD*
Ga0114963_100037077	F102439	N/A	MGEVQRSFVTDDDLPPAKGKRRRMPERLSPPMRKFLTKLARIGARVTWCIELLYDPSKGGQGELRDRAQAGDHTLVLDTVREVEYRAAALAEDIEVFMRPPDRLPSEPGKPARVEAMAQRQAAKLHIFD*
Ga0114963_100037078	F070923	N/A	VQEPARRVAHACFICSACGREVTVGDAPAGMLAHLRGRLRAEIGPRAVQAGRAFDEFCDAICRCWNSEHWTKLARTQPQSQMLAVMDAKVLIAKVQEDVEAMWGASPELRTLYADVGREAVEVFARLWFASMANRTWMRQACKEARRT*