NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114963_10000351

Scaffold Ga0114963_10000351


Overview

Basic Information
Taxon OID3300009154 Open in IMG/M
Scaffold IDGa0114963_10000351 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)30620
Total Scaffold Genes51 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)36 (70.59%)
Novel Protein Genes14 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)10 (71.43%)
Associated Families14

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Croche, Canada
CoordinatesLat. (o)46.8319Long. (o)-72.5Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000635Metagenome / Metatranscriptome970Y
F002149Metagenome / Metatranscriptome589Y
F002826Metagenome / Metatranscriptome527Y
F003304Metagenome494N
F004760Metagenome / Metatranscriptome424N
F007467Metagenome / Metatranscriptome350Y
F010449Metagenome / Metatranscriptome303N
F010603Metagenome / Metatranscriptome301Y
F012569Metagenome / Metatranscriptome279N
F020665Metagenome / Metatranscriptome222Y
F021063Metagenome / Metatranscriptome220N
F058800Metagenome134Y
F074558Metagenome / Metatranscriptome119Y
F098901Metagenome103Y

Sequences

Protein IDFamilyRBSSequence
Ga0114963_1000035111F002149GAGGMMAVEYIEQSGVPESMWPNLAEWFGWFEKQGMVGIVEDKDGIAGVALARCIKDGQKPDHYVHSEDGENVFVDLTISSKGAKSLRCLLLLLWERFGPRKRITFNRSGKPRSYDYMTFMRKARV*
Ga0114963_1000035114F074558AGGAMDRVSYGPLTLFESDAYKQAKAMKAEEDALKLQKLRMDIAKSQEEADMSTAIGRASKAGDIAAFLEQEKQKDVGIPIGEEMGAKMTAKGGPSILEATRMQGELDVEARARQARRDAAMNFAAGEKSLLPTANVDLGGVKQTVLAGQAGKTSADIYGQIYRNQVPQVAATYEAEGFDKDTAIRMASQDVRKELVKASTGGKVVLTGADGLSTISYNNEQAEKMWRDPKTPKAIKMQLNNFFGKEEEPQAASWIKSRLGR*
Ga0114963_1000035119F007467N/AVNDKEAWDQFEDGLQDAKSYDEAIAWIKANQEIVEKLTIRAMINKFNRDISHANKTWRN*
Ga0114963_100003512F004760AGGAMPVYEYEDTRNGKVVELEKTVAERDSVPRYLKRFTVPRKLTLVGVGEPLDNPLGVNQTNLLKGYYRQEQKLGSRFKSEHTPDSIKRAALRRKKYGD*
Ga0114963_1000035126F058800N/AMKQALSKLFYFLGDTISRTLLRAGIGYGLYRTFMLWSLELDDKFDVWKEVKPKRRKKK*
Ga0114963_1000035127F003304GGAGGMKQAMVTQSFGEDWQKILDLTRPRMEAYCKRHNCDFILIDKPLTHPMQYSKSAIGNIMATKGYDQVTFVDADVLITADCPKLSDDAGVFCAFDEGAYLDRKPEMVKLAGAFGGIIEPRFYVNTGVFVVHTKAVGILSMPPIGLHPNHFAEQTWLNVMAHLWNIPLTELDPSFNCMTSVESHFGLDRYKDAMIIHYAGQSNDLVKLANQIKEDEAKLVGLGR*
Ga0114963_1000035128F021063GGTGGVRSTHLCRGDYDERLQQLAGEVALQAIRDLRLLRKRGMVKGMRIVKDHHGVPLNDALEYKNSHEVQKLLRDFKNGTVSWWCRASGVRIDNRTLLRKLKENDYALPT*
Ga0114963_100003513F010603AGGAGMATEFVRSTRKAKNKALRFDAQGFTNVFEVTASSSGGTVNTVATAPASLNVTLNGTSYRIALHT*
Ga0114963_1000035130F020665AGGAGGMKKKTKDIKLVRVDEFKAAKIVVEVEDELFEAMAQAGRKHIAKDKVACFSYALNKALLELCEEVK*
Ga0114963_1000035134F002826AGGMLVESKARLKWGRDILLTARDKLAVERDRASHGHAIDIIRIIAMVDAVALITKEILEEDEKGLTQ*
Ga0114963_100003514F012569N/AMSRALDKFQAQYGFSVGTQGTATGGYWAIQMLSDTTFSAISGKYDGTLTGVTIGSGNIIYGEFDSYTAGTGRVIGYIAG*
Ga0114963_1000035142F098901N/AMKKKMVKRKYKVEYKQTETFVVDVYANNQEQAKKLAGIRFDAGDYQETGDCEVELNSVYDVTNTDDPFYP*
Ga0114963_100003516F010449AGGMSEEQVWNMEVRLARMEERQVQLYAMVERSLAFHGDVANRLGALEHLRTKVLAVAGVVGLACSMAWDVLKNRFN*
Ga0114963_100003519F000635GGAMTLTEIAQYAGEKVGKTDSDTLTFLQKAASLAYRRVWDFAPWRETVTSSTYSVGTNRTITLGTNVETPLSVAYNDAEVDPVDLATIISQDPGLLSDERTGDPDTYHFTGRNSSGVAELDLYPRLATSGTIPLRVIEKLKCITRSNYIVDFPPSNDALGDELRLPHVHHLVLALTHADALERERQYTKAQVITQGANSDLAAMANYELSQVGGVKQITPQSLGELTIEEMFSA*

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