Scaffold Ga0114963_10000351

Overview

Basic Information

• Taxon OID: 3300009154
• Scaffold ID: Ga0114963_10000351
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 30620
• Total Scaffold Genes: 51
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (70.59%)
• Novel Protein Genes: 14
• Novel Protein Genes with Ribosome Binding Sites (RBS): 10 (71.43%)
• Associated Families: 14

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000635	Metagenome / Metatranscriptome	970	Y
F002149	Metagenome / Metatranscriptome	589	Y
F002826	Metagenome / Metatranscriptome	527	Y
F003304	Metagenome	494	N
F004760	Metagenome / Metatranscriptome	424	N
F007467	Metagenome / Metatranscriptome	350	Y
F010449	Metagenome / Metatranscriptome	303	N
F010603	Metagenome / Metatranscriptome	301	Y
F012569	Metagenome / Metatranscriptome	279	N
F020665	Metagenome / Metatranscriptome	222	Y
F021063	Metagenome / Metatranscriptome	220	N
F058800	Metagenome	134	Y
F074558	Metagenome / Metatranscriptome	119	Y
F098901	Metagenome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114963_1000035111	F002149	GAGG	MMAVEYIEQSGVPESMWPNLAEWFGWFEKQGMVGIVEDKDGIAGVALARCIKDGQKPDHYVHSEDGENVFVDLTISSKGAKSLRCLLLLLWERFGPRKRITFNRSGKPRSYDYMTFMRKARV*
Ga0114963_1000035114	F074558	AGGA	MDRVSYGPLTLFESDAYKQAKAMKAEEDALKLQKLRMDIAKSQEEADMSTAIGRASKAGDIAAFLEQEKQKDVGIPIGEEMGAKMTAKGGPSILEATRMQGELDVEARARQARRDAAMNFAAGEKSLLPTANVDLGGVKQTVLAGQAGKTSADIYGQIYRNQVPQVAATYEAEGFDKDTAIRMASQDVRKELVKASTGGKVVLTGADGLSTISYNNEQAEKMWRDPKTPKAIKMQLNNFFGKEEEPQAASWIKSRLGR*
Ga0114963_1000035119	F007467	N/A	VNDKEAWDQFEDGLQDAKSYDEAIAWIKANQEIVEKLTIRAMINKFNRDISHANKTWRN*
Ga0114963_100003512	F004760	AGGA	MPVYEYEDTRNGKVVELEKTVAERDSVPRYLKRFTVPRKLTLVGVGEPLDNPLGVNQTNLLKGYYRQEQKLGSRFKSEHTPDSIKRAALRRKKYGD*
Ga0114963_1000035126	F058800	N/A	MKQALSKLFYFLGDTISRTLLRAGIGYGLYRTFMLWSLELDDKFDVWKEVKPKRRKKK*
Ga0114963_1000035127	F003304	GGAGG	MKQAMVTQSFGEDWQKILDLTRPRMEAYCKRHNCDFILIDKPLTHPMQYSKSAIGNIMATKGYDQVTFVDADVLITADCPKLSDDAGVFCAFDEGAYLDRKPEMVKLAGAFGGIIEPRFYVNTGVFVVHTKAVGILSMPPIGLHPNHFAEQTWLNVMAHLWNIPLTELDPSFNCMTSVESHFGLDRYKDAMIIHYAGQSNDLVKLANQIKEDEAKLVGLGR*
Ga0114963_1000035128	F021063	GGTGG	VRSTHLCRGDYDERLQQLAGEVALQAIRDLRLLRKRGMVKGMRIVKDHHGVPLNDALEYKNSHEVQKLLRDFKNGTVSWWCRASGVRIDNRTLLRKLKENDYALPT*
Ga0114963_100003513	F010603	AGGAG	MATEFVRSTRKAKNKALRFDAQGFTNVFEVTASSSGGTVNTVATAPASLNVTLNGTSYRIALHT*
Ga0114963_1000035130	F020665	AGGAGG	MKKKTKDIKLVRVDEFKAAKIVVEVEDELFEAMAQAGRKHIAKDKVACFSYALNKALLELCEEVK*
Ga0114963_1000035134	F002826	AGG	MLVESKARLKWGRDILLTARDKLAVERDRASHGHAIDIIRIIAMVDAVALITKEILEEDEKGLTQ*
Ga0114963_100003514	F012569	N/A	MSRALDKFQAQYGFSVGTQGTATGGYWAIQMLSDTTFSAISGKYDGTLTGVTIGSGNIIYGEFDSYTAGTGRVIGYIAG*
Ga0114963_1000035142	F098901	N/A	MKKKMVKRKYKVEYKQTETFVVDVYANNQEQAKKLAGIRFDAGDYQETGDCEVELNSVYDVTNTDDPFYP*
Ga0114963_100003516	F010449	AGG	MSEEQVWNMEVRLARMEERQVQLYAMVERSLAFHGDVANRLGALEHLRTKVLAVAGVVGLACSMAWDVLKNRFN*
Ga0114963_100003519	F000635	GGA	MTLTEIAQYAGEKVGKTDSDTLTFLQKAASLAYRRVWDFAPWRETVTSSTYSVGTNRTITLGTNVETPLSVAYNDAEVDPVDLATIISQDPGLLSDERTGDPDTYHFTGRNSSGVAELDLYPRLATSGTIPLRVIEKLKCITRSNYIVDFPPSNDALGDELRLPHVHHLVLALTHADALERERQYTKAQVITQGANSDLAAMANYELSQVGGVKQITPQSLGELTIEEMFSA*