Scaffold Ga0114963_10000225

Overview

Basic Information

• Taxon OID: 3300009154
• Scaffold ID: Ga0114963_10000225
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_131016_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 37084
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 38 (69.09%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (58.33%)
• Associated Families: 12

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000635	Metagenome / Metatranscriptome	970	Y
F001459	Metagenome / Metatranscriptome	690	Y
F002149	Metagenome / Metatranscriptome	589	Y
F002826	Metagenome / Metatranscriptome	527	Y
F003304	Metagenome	494	N
F003962	Metagenome / Metatranscriptome	459	Y
F004760	Metagenome / Metatranscriptome	424	N
F007467	Metagenome / Metatranscriptome	350	Y
F010449	Metagenome / Metatranscriptome	303	N
F011649	Metagenome	288	Y
F035221	Metagenome / Metatranscriptome	172	N
F090072	Metagenome / Metatranscriptome	108	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114963_1000022511	F000635	GGA	MTLTEIAQYAGEKIGKTDADTLTFLQKAASLAYRRVWDFAPWRETVTNSTYSVGTNRQITLGTNVETPLSIAYNDAEVDPIDLATIISQDPGLLSDDRTGDPDTYHFTGRNSSGIAQLNLYPRLATSGTIPLRVVEKLKCLTRTNYIVDFPPSTDALDDELRLPHVHHLVLALTHADALERERQYAKAQAITQGANSDLAAMANYELSQVGGVKQITPQSLGELTIEEMFSA*
Ga0114963_1000022513	F002149	AGAAG	MTAIEYIEQSSVPEAMWPNLGAWYGWFEKQGMVGIVKDGDEIAGVALARCIKDGQKADHYVHSEDGENVFVDLTISSKGAKSLKCLLLLLWERFGPRKRITFNRSGKPRSYDYMTFMRKALL*
Ga0114963_1000022519	F035221	GAG	MKAITTIMVTAMLMASVNADDFDGGVYDSGYAVFSGGKGLAITSNGLIVDNGILKQTPNGCYSSCGDVYYGGNEIVTKTGYLYYGSNGTKVQVGEYYSGTAGSTYVFENDPE*
Ga0114963_100002252	F004760	N/A	MPIYQYEDSRNGKVVELEKAVAERDSVPRYLKRFTVPQRLSLVGVGEPLDNPLGVNQTNLLKGYYRQEQKLGSRFKSEHTPDSIKRAALRRKKYGE*
Ga0114963_1000022521	F007467	N/A	MTEKEAWAKFEDGLKDTQSFDEAVAWVKKNKKIVEKLTMISMIRRFNEDISKANRTWRN*
Ga0114963_1000022527	F003304	AGGA	MKKGLVTQAFGDDWKKILELTQPRMEAYCKRHKIDFMALDKPLVEPVQYSKSAIGNIIATKGYEQITFVDCDVLIANDCDEIGAEVEMFSAFDEGAFLDRKYEMGKLASAFGARIDPRFYVNTGVFVVSSKAVGILSMPPLGLLPNHFAEQTWMNIMIHLWNVPLDNLDPAYNCMTSVESHFGLDRYKDAFCIHYAGQSNDLVKLADQIKEDEAKLVELGR*
Ga0114963_1000022534	F002826	AGG	MDTEAKARLKWGRDILLSAREKLVVERDRASHGRAIDMIQIITMVDAAALICKEIVEEQ*
Ga0114963_1000022539	F003962	N/A	MATDESQEGWVLNQDREQLKLANRFICLLQKENAQLHGVLRLLGQLVDDMDANCSFEVFEHQWEGLTDEVNRLSGFFEAHQKALQSLHDACPEAFDADEVDDS*
Ga0114963_1000022541	F090072	AGGAG	MDEQQIIKAYLSRLGRKGGSVKGPQKVRPREHYQKAVGIRWAKYRERQTESQASKR*
Ga0114963_1000022545	F011649	N/A	MDESAADSTAPIEKAKNGREVFTEKIAEEIISACGSGFTLEKAGALVGVNPSTIRTWSQRKPDFARRVETARKKHELSLLRDIELAGAKSWQAKAWMAERIYNHAQPSARLSVTQEHTHGISSNLASLLAGIAGRKKTQVIDTKAVSVNPIPAIKYNTYCATDGTQTIVTPTQKVSGRTKHIAMRRRKPRKESLAKYTTTPPTTPPAPI*
Ga0114963_1000022552	F001459	N/A	MRKLKAALAFMRDQEWVNEPKWEDEDEKAWTGFLSTPTGKRLSLILLNLTLRQNGSAVMKKSEALADACGYAKGFRGCVATLESLATQKLNSAVLGYEDGSDDTIAN*
Ga0114963_100002257	F010449	AGG	MSEEQVWNMEVRLARMEERQVQLYAMVERSLAFHGDVANRLGALEHLRTRLLAVAGLIGLACSMAWDVLKNRLSN*