Scaffold Ga0114980_10060068

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10060068
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2295
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 4 (40.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (50.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F001968	Metagenome / Metatranscriptome	610	Y
F037598	Metagenome / Metatranscriptome	167	Y
F068809	Metagenome / Metatranscriptome	124	Y
F070113	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_100600681	F001968	GAG	MFDELWQEIQDSPGEIFDIPELRDLEEEKFNVNEYLNSDYDY*
Ga0114980_100600684	F070113	N/A	MTLTTEQFNKFVENYVSLIMEGMDSESIEMMVYDLLVKEYKTYTEEEIVGEIKELYSDELAADLMEGNW*
Ga0114980_100600685	F068809	GGAGG	VNFLTPDDLHALIELVESNNQYNDDDDKEFWDDVLIRLQQTYRHCLDV*
Ga0114980_100600689	F037598	N/A	MTVRTHVLPLDLCTVTLTEAQWSTIRTAVLSIACDCRIAGKGTDADYYLKAYNDLKAAMGMDD*