Scaffold Ga0114980_10024085

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10024085
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3787
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 5 (50.00%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004760	Metagenome / Metatranscriptome	424	N
F010449	Metagenome / Metatranscriptome	303	N
F010603	Metagenome / Metatranscriptome	301	Y
F012569	Metagenome / Metatranscriptome	279	N
F043233	Metagenome / Metatranscriptome	156	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_1002408510	F043233	N/A	IAKYESELTQLRKATTPASGQPSGPARVKAFHELSSEEQGRELLRMAAEADRS*
Ga0114980_100240852	F010449	AGG	MSEDQVWSLEVRLARMEERQVQLYAMVERSLANYGDLANKVNALEHLRTRLLAISGIIGLVCSMAWDVIKNRNN*
Ga0114980_100240855	F012569	N/A	MSRALDKFQAQYGFSVGTQGTATAGYWAIQMLENTTFSAISGKYDGTLTGITIGSGNIIYGEFNSYTAGTGKVIGYIAG*
Ga0114980_100240856	F010603	AGGAG	MANEFVRSTRKAKGKALRFDTQGFTNVFEITAASSGGTVNTVATAPASLNVTLNGTSYRIALHS*
Ga0114980_100240857	F004760	AGGAGG	MPVYQYLDTRKKSIVELDRSVAERDNVPKHLKRFTVPQRLALVGVGEPLDNPLGANKTNIMKGYYKQEQKLGSRFKSEFSADQVKRAWSRKGD*