Scaffold Ga0114980_10023096

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10023096
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 3871
• Total Scaffold Genes: 9
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (11.11%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (20.00%)
• Associated Families: 5

Taxonomy: All Organisms → cellular organisms → Archaea → DPANN group → Candidatus Pacearchaeota → Candidatus Pacearchaeota archaeon (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002843	Metagenome / Metatranscriptome	526	Y
F018915	Metagenome / Metatranscriptome	232	Y
F032259	Metagenome / Metatranscriptome	180	Y
F037116	Metagenome / Metatranscriptome	168	N
F068565	Metagenome / Metatranscriptome	124	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_100230961	F068565	N/A	MLTERTIFSLCEVLPNTTLQVRLADQIVDGEAVKASTFRRYCLPPGSDLAGQPEQVVAIAGAVWTPAAIAAYNANLQPTIQ*
Ga0114980_100230962	F002843	N/A	MIVPVNIVAVQVNQNNSLFVTTGVDYNSDGAIAGSEITAQYTLNPGDDLTGQPVEVVNIANALWTPAVVAAYKAANPVVEAAQPKSE*
Ga0114980_100230963	F037116	N/A	MEPTNSSTSPGLSLAAAAGATAVSFLPVLTDWVRLITALIGLLCACYAAFRLFRSK*
Ga0114980_100230965	F018915	N/A	VNWIYQILKALLDWFRETPPTDVQHGKAPEALKSDLADRIVDLPGLPDDQGGPSAKR*
Ga0114980_100230966	F032259	AGGTGG	VPSGDPVMLAQPTTASVYGFDSDKKLVGPSKVTLPAGWYVLPKN*