Basic Information | |
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Taxon OID | 3300009152 Open in IMG/M |
Scaffold ID | Ga0114980_10022394 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 3940 |
Total Scaffold Genes | 6 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (66.67%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F005740 | Metagenome / Metatranscriptome | 391 | N |
F007361 | Metagenome / Metatranscriptome | 352 | N |
F008489 | Metagenome / Metatranscriptome | 332 | Y |
F088747 | Metagenome | 109 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114980_100223941 | F008489 | N/A | HKALLVLDFDLITSMRKKFPPAWAGIWTGLDVLQVLKSAYSSRARCFVLARGSDQSIQFWEISKAERSDKSVASDKKKIEWLIQTRGYNFEIPFGLKRLDSGDIFIDELDGEDSLDGQTNYVDRKVSFNVKYRPDQYPGWIDWANWSECATTDQCGNLCPTLKNFQPQYRPKMRLPTPEDTSCNSTISTPTRNLYEVQMALTIRGFCRIKSVRVHAYDVQESAVGECRTFQGCKTLEACDVNPFTYTSE* |
Ga0114980_100223943 | F005740 | GAG | MKLIVQDIQSTIARVIGVCVDDPRVYDYINQACRRLLHKGLWAGAYGRFTINTVGGCITWPRQIETIEAVADCCGVGTVRNQWFEFQESGYGLLGENSACAGKQLVDRGTVVSYRDMSGGLNSYLRVYPGDASDVGKTITLQGVDQNGQWIRTQSGGVWIDGEKLTLALPYVQSTKKFTSLTGVIRETTNTVSRLYEYNATTLLELDVAVYDPDETLPQYRRSYLADRCSSDDSKPVTVMAKMRHVNAATANDYLIPPSPDAIKLMVMAIRKEENDLIQEAVAYEAKAVQAVQEQTMQYLGDAVHTIRMVGVGLNGGGFSQWF* |
Ga0114980_100223945 | F007361 | N/A | MKGKLFQICGLPRFGSAFMSVLFSLENDCLGIHEQGATDPNWKQSIEGYRLIHKYVADCSTYGYLPKAVVDDSIKVYVKKDAKSSSKECTERFGYEVHLQSFESIREYADQWACSNDVMVIEEGELFKLDTLRRIWVHCFKDERPFPEEKATRLLTMNIQRHEPEKVFSVENGNRFVKEVF* |
Ga0114980_100223946 | F088747 | AGGAGG | MGLLGAAAIVGGSSLIGGLLSKGSKPKVPEFKPIDFAAEQKAAIKQNLESLPAASDLAQKTTSADQSVLEEQLRRAIPGYDKLIAQAGSNIGASLRGEISPEISSQVQRSTAGRALSGGFGG |
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