Scaffold Ga0114980_10017603

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10017603
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 4492
• Total Scaffold Genes: 12
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Predicted Viral (Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041777	Metagenome	159	Y
F045753	Metagenome / Metatranscriptome	152	Y
F049635	Metagenome / Metatranscriptome	146	N
F071250	Metagenome	122	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_1001760310	F041777	N/A	MKKTLLYIAILFAGMLIAGTIDESTRQLEQQPNNTISK*
Ga0114980_100176034	F049635	N/A	MNKAIYKTPFGRLVKINFKTMQNFKNVLRISDPTARLYVTHPERMRIKDFNNICLHTGLSREEVFSTFTPTILINEEND*
Ga0114980_100176035	F071250	N/A	MNNKPYNQNTMKKLVTLEKKVEKLLKQAKKYRNDNKALCVKIWQDQFAERKDITSNFFAMYESGKYVTADNITRIARLVKQHNPELRGTNHDDNKKKEQLIKPLLKK*
Ga0114980_100176037	F045753	N/A	MKSFYCPRVSYCFTKDDMNTLNERIKAIALNYHEEETGWFEVDENQHLVFIDDQDNMYTIHLRGRFWRADEPNFDLEFVRLEKDGISFHFDIEMFDDKV*