Basic Information | |
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Taxon OID | 3300009152 Open in IMG/M |
Scaffold ID | Ga0114980_10008172 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 6824 |
Total Scaffold Genes | 22 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 12 (54.55%) |
Novel Protein Genes | 11 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 8 (72.73%) |
Associated Families | 11 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 2 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F024040 | Metagenome / Metatranscriptome | 207 | Y |
F027756 | Metagenome / Metatranscriptome | 193 | N |
F030670 | Metagenome / Metatranscriptome | 184 | Y |
F032536 | Metagenome / Metatranscriptome | 179 | Y |
F039497 | Metagenome / Metatranscriptome | 163 | N |
F048123 | Metagenome / Metatranscriptome | 148 | Y |
F062447 | Metagenome / Metatranscriptome | 130 | N |
F078229 | Metagenome / Metatranscriptome | 116 | Y |
F082149 | Metagenome / Metatranscriptome | 113 | N |
F104482 | Metagenome / Metatranscriptome | 100 | N |
F104483 | Metagenome | 100 | N |
Protein ID | Family | RBS | Sequence |
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Ga0114980_1000817210 | F104482 | N/A | MTSEEFEKAMKAEGRLISKVCYRITFKGMGLYILNSFQFKLLPKFFYMNGKYFTECGFNWLGWIFEFQWNR* |
Ga0114980_1000817212 | F032536 | GGA | MSKRQSLEELMQDFRFHKNPILNWAFGQSNYLYHTFLNGKWKVKNTLQKLTRGFSDSDCWNLPQSTAKFMLPRIKHLRQNYYSLANRHHLIIDDKIVPYVPKEDDFVFNTTLGCHIDKTSGLEISLNQKEYEYVLDEIIFALQMIVNEEDSEVGLEELYEVYPKGFDPIKDRQMFLEKQEDGTYLVEFERKENIQPDYSKLNKAYERQRNGLILLGLYFRDLWD* |
Ga0114980_1000817213 | F062447 | AGAAGG | MKHKIFWEKNSRVKGIVPQEQIINKTSTDKFPCDAVTIRMYNLNSKNPTATAYFYGKEAQGTSWNGSNYTFAETKLMVTFDKDKEGYSFNGGLKSYSLQDLKEVLDSVREILNKI* |
Ga0114980_1000817214 | F024040 | GAGG | MNIYVTGHNWLAKVDIDSQKIDKSNWYNEACTRAVESVLDQEEKEGVDLKIQDYEDFGLGVILLTWDEKNSKNEDDHIVLLTSNILANAGRWEEYRFVKDYEEKAKEEGL* |
Ga0114980_1000817216 | F104483 | GGAG | MNKKIIDKIDLVIEDITYLQELIDFDTTDSSEYDLDSVINLLAEIRGRVSTQEEEVEKIDLKQL* |
Ga0114980_1000817220 | F039497 | AGCAGG | MNEEDNFHCQAGNQLRDTLYKDILRYAQESDMTAYQVIGVLESLKFDLLNAMRNANTEGDEDEI* |
Ga0114980_1000817221 | F082149 | AGG | MKLGLHIDWCIGRWFGRDNNLEIRVTLPTISLGYKKEDDDKWFGFKFNLRTDISFESYEYGKIFTLILFGFGVKVSRFNL* |
Ga0114980_100081723 | F027756 | GAG | MKLKDLIDRKILYLNFPINKYAIQEGKVTEISPAEKCIKINNDWHLISNIRIIELFSEKERPALGFN* |
Ga0114980_100081726 | F030670 | N/A | MKIIRYIKQLEDEFGNDLELWGAYEETRKDNYPNVDFIDAKLLKTFPSPYHARNWIENDGKNN* |
Ga0114980_100081727 | F078229 | N/A | MSKIKYTYYIEQDKDKDGNLVQGWSIYKAPLVKTIKVKTFKKLKDADAFLDNYENN* |
Ga0114980_100081729 | F048123 | GGA | MKPRYDFTKGKLISYDGEIIEFAGSAVVDKYPDQVQEIMDLFDFKKGEYLVTDESSVGDFEKQNMNPKKLQKFKKKYGFSLTNKTNISKIAERMYNFRPF* |
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