NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0114980_10008172

Scaffold Ga0114980_10008172


Overview

Basic Information
Taxon OID3300009152 Open in IMG/M
Scaffold IDGa0114980_10008172 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6824
Total Scaffold Genes22 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (54.55%)
Novel Protein Genes11 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)8 (72.73%)
Associated Families11

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location NameLake Simoncouche, Canada
CoordinatesLat. (o)48.2311Long. (o)-71.2508Alt. (m)Depth (m)2
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024040Metagenome / Metatranscriptome207Y
F027756Metagenome / Metatranscriptome193N
F030670Metagenome / Metatranscriptome184Y
F032536Metagenome / Metatranscriptome179Y
F039497Metagenome / Metatranscriptome163N
F048123Metagenome / Metatranscriptome148Y
F062447Metagenome / Metatranscriptome130N
F078229Metagenome / Metatranscriptome116Y
F082149Metagenome / Metatranscriptome113N
F104482Metagenome / Metatranscriptome100N
F104483Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0114980_1000817210F104482N/AMTSEEFEKAMKAEGRLISKVCYRITFKGMGLYILNSFQFKLLPKFFYMNGKYFTECGFNWLGWIFEFQWNR*
Ga0114980_1000817212F032536GGAMSKRQSLEELMQDFRFHKNPILNWAFGQSNYLYHTFLNGKWKVKNTLQKLTRGFSDSDCWNLPQSTAKFMLPRIKHLRQNYYSLANRHHLIIDDKIVPYVPKEDDFVFNTTLGCHIDKTSGLEISLNQKEYEYVLDEIIFALQMIVNEEDSEVGLEELYEVYPKGFDPIKDRQMFLEKQEDGTYLVEFERKENIQPDYSKLNKAYERQRNGLILLGLYFRDLWD*
Ga0114980_1000817213F062447AGAAGGMKHKIFWEKNSRVKGIVPQEQIINKTSTDKFPCDAVTIRMYNLNSKNPTATAYFYGKEAQGTSWNGSNYTFAETKLMVTFDKDKEGYSFNGGLKSYSLQDLKEVLDSVREILNKI*
Ga0114980_1000817214F024040GAGGMNIYVTGHNWLAKVDIDSQKIDKSNWYNEACTRAVESVLDQEEKEGVDLKIQDYEDFGLGVILLTWDEKNSKNEDDHIVLLTSNILANAGRWEEYRFVKDYEEKAKEEGL*
Ga0114980_1000817216F104483GGAGMNKKIIDKIDLVIEDITYLQELIDFDTTDSSEYDLDSVINLLAEIRGRVSTQEEEVEKIDLKQL*
Ga0114980_1000817220F039497AGCAGGMNEEDNFHCQAGNQLRDTLYKDILRYAQESDMTAYQVIGVLESLKFDLLNAMRNANTEGDEDEI*
Ga0114980_1000817221F082149AGGMKLGLHIDWCIGRWFGRDNNLEIRVTLPTISLGYKKEDDDKWFGFKFNLRTDISFESYEYGKIFTLILFGFGVKVSRFNL*
Ga0114980_100081723F027756GAGMKLKDLIDRKILYLNFPINKYAIQEGKVTEISPAEKCIKINNDWHLISNIRIIELFSEKERPALGFN*
Ga0114980_100081726F030670N/AMKIIRYIKQLEDEFGNDLELWGAYEETRKDNYPNVDFIDAKLLKTFPSPYHARNWIENDGKNN*
Ga0114980_100081727F078229N/AMSKIKYTYYIEQDKDKDGNLVQGWSIYKAPLVKTIKVKTFKKLKDADAFLDNYENN*
Ga0114980_100081729F048123GGAMKPRYDFTKGKLISYDGEIIEFAGSAVVDKYPDQVQEIMDLFDFKKGEYLVTDESSVGDFEKQNMNPKKLQKFKKKYGFSLTNKTNISKIAERMYNFRPF*

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