Scaffold Ga0114980_10002135

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10002135
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14084
• Total Scaffold Genes: 26
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 17 (65.38%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007166	Metagenome / Metatranscriptome	356	Y
F007848	Metagenome	343	Y
F027399	Metagenome	194	Y
F027764	Metagenome	193	Y
F045569	Metagenome	152	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_1000213510	F045569	N/A	VRTLVEIDPVKFGVTWQKVEAMEYEVAELRKDVKQLLELANKGRGGLWAGMMVVSAISAFVGFISQYLTNK*
Ga0114980_1000213514	F027764	GAGG	MQIQIEIVKENKDGSADALVHFDKEGLGMLVEAGIISILRQYIEQEKKAKKGKK*
Ga0114980_1000213522	F007166	N/A	MPFKGIQMGELNQLMLEMEERLEIALDNMEFGTEMAQDDIDVIRAACGKPKRNVLLQTVFDDFGNVFGGQNATV*
Ga0114980_1000213525	F007848	GGA	MKDFIGSCLLGAFFAAMFVYGIPAKAQTVQLTDAQGFYRGTVQINGNTAQFVNPMGYTTQTATIYPNQVVITTPNGYTQSVVGNTGYTVPPSPPTPMSPRVMQ*
Ga0114980_100021359	F027399	GAG	MNFTFTWILDKFGFTPKVETFDFPFTPKPVAKKVAKKTVKKATTRKSKIK*