Scaffold Ga0114980_10001175

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10001175
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18756
• Total Scaffold Genes: 27
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 24 (88.89%)
• Novel Protein Genes: 8
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (100.00%)
• Associated Families: 8

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000857	Metagenome / Metatranscriptome	858	Y
F001059	Metagenome / Metatranscriptome	790	Y
F004695	Metagenome	427	Y
F005087	Metagenome / Metatranscriptome	412	Y
F012869	Metagenome / Metatranscriptome	276	Y
F027490	Metagenome / Metatranscriptome	194	Y
F079997	Metagenome	115	Y
F098944	Metagenome	103	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_1000117512	F001059	AGGA	MATYDIASLKEDLPTAKELALFVYDKTDGLVSLDLIGKPKEEQYIVAKNALEGKKVPAEFLHDGNPYVDKKDTIPEDPLRKMPKRNIDLPDEDSQVHYFGATNMPHPLDPQSDKKVYIDFRKYENGLITYQITGPVEKIPVGEKINKYGQTVPEKYTWLDPRTEEKILRNPDGTFSKEGRGVHTFLIGEKGGGVWSMIDRDIVSISSKNIADPWA*
Ga0114980_1000117514	F027490	GAG	MSYGKVINGGAQMRKGVTKGINDKLSTRSAEDDRRATVAGAVNSAYKVNTVSSQHTNNTKGGTFTKPSNRSKDYAA*
Ga0114980_1000117516	F098944	AGG	MFNEIRPEGSTVNSAELKRKAREYAKAKRAEKKAMKLVTGKIEPRETPEAAPVNEFDLTNFTPRSQKPNPGGRPKSIVNKVTEYGALFNKLNDERTSRGLPPLKTAMEVLIDAMQSDELDIKDKAKIADKLAPFESSRAPIISVEHIQNVTREDEGDADDALNDFMESLRKI*
Ga0114980_1000117519	F012869	AGG	MIAIHTKYIGPTNTRGSRIKAYTASWGSRKGFTVTVPYNHALDGVALHFEAVKALVAKHGLDWNLEAMRYGDSADGRGFSFCFDSSKV*
Ga0114980_1000117526	F079997	AGGA	MMPQIDIGAVHSTHKFKFCTKCDTPKPPEGGVEMGTKWNCQSCWLKRITGVHLKQNRIDGGKQ*
Ga0114980_100011754	F005087	AGGA	MALFIQSGNALVSRVAQWVGAIPSSIGINATAFDSATGVITTSASAVGQVLIGDFIGPSVMGSYTTVLAVSSSTITVSDPDSSWENQTFPLAILKLPTQSTVEILSCIQLCELKMRTIELPALRTDPYGDTPTILLTDSQGMADIPADMNKPILFFQETPNSQVEPGTPAASMGPWIIYDRVGDREIIRRRMIDQLYVRPFGVPRVIRASFSEVGQRYVFTPNPGENVEIKAYYQRTFPFLFSPTGDTIAPIVQNNATLASFPEGYMYGTLWAYYDKNKNNEEAQKWNARYEDSYGLIEDQNFKGKWLGGDQHLTSEFQPRNYRYSFK*
Ga0114980_100011755	F000857	GGA	MEQSMELNLNNEEAKVNEDYYTGGILAGGMEGALIKNDKMFNDVKSGTWSQTFNTPNMNYKVGALDGERYVQYEQKNVETIRQYCKERREFYKMIGTTDNPFFAGTFEAMNLPKCFAHEISSKWFSNRPWELIKTDKKDKILFYAIVNQFYSDFVCHPSGKIPLPYNPIVPTK*
Ga0114980_100011759	F004695	AGGA	MLDKQNVIVENLASSSGNRGLTEQVCHEVYVKMVDYLRLTQSKNTYNRFTDYHYLNIPVSNSTEPIRGIDYIQPIVAPGIDYATAVITKCLMPNGKINFEFERFSESDGDQARQATEMVKYMLNSKNDSYQVIRDWAQDSLLHKNGIVMVSPVRNPITQYKEVTGTRAQLRVFETLAGEKGLTATRQNMLKVDVDLEAAMQQVMSADESEQMQEPTGDELQEALNENTIYRAKYKLTGYETSVRVKHVAQHYFVCNPTISTIQDQDFVGFYDPMTIHECKTQFPFVDLEKLAEHAAYGPAGAYQAGALENDLALHARDSTPVPGQGVIASQGADKYSRVIMLTTAWIRRDIDGDGEEEIVECCFSGSYILYAKEVDFIPLANMCPKPITGNFFGYSLGERLVPLQEYATAIRRAEMSFAMQSSTPRIGVNPEFLDAEEIQRGVSAMFILDRKFDPTKHIFEFQPMQGNLAYVESAMNRFESDKMAMIGMTSPSDTLNPEVMKDGNSGFKLQLAMGPNQLIQDEMVKNCAIGLRDVIYITWKTLVQYSDDYNIQQLAATCLKGQEFLDAKSIENFEFIDRRMINIDLALGFLSEENRLTRQQMILQAQQQFGQAMMMIPPEVPEMFIKVRRPFEDTLRVLGVKDVDAYLPTMDEALKIAQAQAAKGPSAEQQETQSKVALNNAKTEESGSVTALNIKKAEDIDTDNMFEALAAKRGKLTAVEID*