Scaffold Ga0114980_10000962

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10000962
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20527
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 34 (94.44%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007519	Metagenome / Metatranscriptome	349	Y
F014358	Metagenome	263	Y
F034467	Metagenome	174	Y
F100689	Metagenome	102	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_1000096222	F007519	AGGGGG	MSGIENLKLEKQRKGRGLGKKAALACTSLRLPEHVMNYFNTNFAYTKQAKMREILTEYVNNQTGVKL*
Ga0114980_1000096223	F034467	AGGAG	MEEIKYKSKVMPLRKCTDPKFKWYSPSNTDIRKTWRKARLLIRITKGAAYVRN*
Ga0114980_1000096229	F100689	GAGG	MLARYYVTGWSNRRGSWIAEVVEAQSKAVAKLRFGLTYPTLKTVKTYRLKGGG*
Ga0114980_1000096235	F014358	AGG	MTQKDWKFCTDCGDELHVSRHQAFCKFCERDRDATAKTARMSWCVVQEYGKGPYQLVTPTSAPTTLKQTNQKELRS*