Scaffold Ga0114980_10000932

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10000932
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20809
• Total Scaffold Genes: 37
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 20 (54.05%)
• Novel Protein Genes: 12
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (66.67%)
• Associated Families: 12

Taxonomy: All Organisms → cellular organisms → Bacteria (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005846	Metagenome	388	Y
F007164	Metagenome / Metatranscriptome	356	Y
F008938	Metagenome	325	Y
F010463	Metagenome	303	N
F011284	Metagenome	292	N
F012113	Metagenome / Metatranscriptome	283	Y
F023059	Metagenome	211	Y
F023585	Metagenome	209	Y
F023833	Metagenome	208	Y
F024265	Metagenome	206	N
F033350	Metagenome	177	N
F093506	Metagenome	106	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_1000093210	F024265	N/A	MNETYTTAEARANSILTDRYPGKELEKLYATTRNQATIDMLRDAVFTLITNEIPTCTIAEVLKKTHGAIQYHLRYLEGRGKIKRPNKRCHWTEVKCE*
Ga0114980_1000093212	F010463	N/A	MITQPQELVLAATIHRVKMCEDKIKEFEQMVSTLTSQMAQNRTELASKGLASLVMGTTTPLDIPKELVPTYGKHRARCNRSHSIVKKRWELWKAQHDSGLSIQEIAKAWGCHHTSVLNAKNRNFTPRKATGRGKK*
Ga0114980_1000093214	F023585	AGGA	MSVKRLSLLDEFHAVISGRLKVLFKRLSHAEVENFRDIINNLDYSHRITKELLKKAKEFQKRDIEAKKK*
Ga0114980_1000093216	F033350	GGAG	MPTDIQIPETKWSMLVWRTTKEKPRNDERVLMDIGSEVVVGRFVDDAFVSRSWGHSENDVRLWASWPVAPKW*
Ga0114980_1000093217	F023833	AGGA	MKSLSDVIEETLKETASKAASLERERCAELVQQLADGTEDQVITGILNEVVTAIRRLPDAN*
Ga0114980_1000093221	F005846	N/A	MTSFPLPARPQPSAVPASHTEFSKDTSIEGKANGWRGLFHQKTGIGYNRYGKIASNHNLMVERLSNAGIKAPYIDCEIMGMRTKTGKGTIIVMDAFDPANPKPYAERMKEIEHLEAVTFDVPDNKLLRFVRLTHSKIKSIWEEMEFQNNKAGETIWEGFVMKSLNDGKYPFITKPSYCSYEWQKERIRS*
Ga0114980_1000093226	F011284	AGTAG	MTSSESVEKKEKLFTKKHDLHMSTIQMAAVECIEKKYKRGVEEHGGTKLWEMPSVSLVENAIEEATDQLTYLLSLRQQMHIVLALAKDGCLDETLTNPRARECCNLIYTTLTGQSKPPL*
Ga0114980_1000093228	F023059	GGA	MWEATLGLLAGVVGILTWWLKNRAKTRQERDDDEIAYNRRLRDSEVDSWIHRR*
Ga0114980_1000093229	F012113	N/A	MNQLLSFVQTQDLFAWLGALTALLTAAIAVASLFPGDEPEATLQKIVDFISKYLSRK*
Ga0114980_100009323	F008938	GGA	MIRQKELCDKWGLTKGAISQLVKAGMPLTSVADAERWKIANQKNPSRARPILSASANLSETSENLDAESIKLENPLGRLHRARRAEVVAYSLVQRAANEKNPVAMRAAVQGWGEAKKRVAEAEMEHARWEEMNRVTLRMDEVQEWITKWHGGIRALLDAMPSSLAARANPSDPECAKQAIQDGVNQIFITIQKGEGAFK*
Ga0114980_1000093233	F093506	AGGA	MSATIISNITSFDYEPDIITDNGRDGISTFQFSIVGLFSALNSNFSLDQVVNGVPDQPPGNFRVVRRNMSHIAGDTSTGLYRLEVSAEGGTGDNSLYILETSYQYQKEIVSGFVQTPAQDIAINYICEWLSPTATITTNSQGEDVTDVQNKAKAFVSNLKVQIIRNKPATLAPVGTVQYPVYGFAIDENIINVVGSSVEKAGGLFRVRASATKGQMQSAL*
Ga0114980_100009325	F007164	AGGA	MSEKQVGMELQRTVKQLEKAKETAIEQMGVAIGLAADAGDILISARTEGLDMDKVLEIGQINGEQGRRLERVAKARPALQAPTPGGLKQLALWTGLLPDPIETSNPKAEAAWHSYIIKARQWLARKTPAQWTPAQRQQFLEEARPIVEAYKEAGGEL*