Scaffold Ga0114980_10000498

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10000498
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 28810
• Total Scaffold Genes: 55
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 36 (65.45%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 2 (66.67%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004789	Metagenome / Metatranscriptome	423	Y
F024498	Metagenome / Metatranscriptome	205	Y
F069735	Metagenome	123	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_1000049815	F004789	GGAG	MTLPGTYQNPSTKPCWTFCSSCNRCQDKGRYTKCNSCSGRYDPMGKTDPHSEDFCDCKNGVLRWRTKEGKLIMTRFKTNPFKGQVKYDKKSEDERDWDSYVADMREKMDDPNWNPIGIYEED*
Ga0114980_1000049824	F069735	N/A	MNELLISFIGPQIEEIISAYTTDSSNSLYFVSIPDIDTLDLGIHEMASLVARTSNVYGRVARLAGMARAQYKLIEGSYKKMYKANRVGKNEAEREANALEAAESEYTALITAEAIVNLAESMELAARIASESSRKLIDKIQSMQVASAREEKGYFNDKDFNTY*
Ga0114980_1000049838	F024498	AGGAG	MSKVAWDYIVPVKLPADLKGVTPGKLPANLLVSIPGGGKLHRLAANAWLAMVAKAKAEGVELKPTSSRRYL*