Basic Information | |
---|---|
Taxon OID | 3300009152 Open in IMG/M |
Scaffold ID | Ga0114980_10000455 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 29816 |
Total Scaffold Genes | 57 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 6 (10.53%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
Associated Families | 5 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F002643 | Metagenome / Metatranscriptome | 540 | Y |
F032657 | Metagenome | 179 | Y |
F034181 | Metagenome | 175 | Y |
F037724 | Metagenome / Metatranscriptome | 167 | Y |
F051915 | Metagenome / Metatranscriptome | 143 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0114980_1000045528 | F034181 | AGGA | MNAVIFLNYKNYSVKTLGINLSNAGLDVEQVVIVKEKGIANAINVGLNKIDFSNIQYVTLLSNDILEPDNWLKVRNIFMQDKSVGICAIPLVGGFDDTTDIIGNFTISKEVIKNVGAFNTALDPYGAIDLDYCTRVRAAGLYTKYIHSGWATHIEQNGIDAYGYNKNELVKSTWELHTSNVANYSNGSKTYYLPL* |
Ga0114980_1000045534 | F032657 | N/A | MTIIEDFIRTSYPLYTIQEFRIAFKMAVQGKLDCSTEHYEKFSPKFIGQVMVAYTKKANEVRKIAKPIVNEILAPKLTDDEIVSFTQKEWLESPRNDFNKLFNAEKVFDILIKQEKLKFHPSEMLQIVRIVRQDNAQRLQKLYGADAKEFNKKIKDNNFVDTQCKKLALVKYFENLPS* |
Ga0114980_100004555 | F037724 | N/A | MNPKEALLQIRALFEDMPQVIPPVEPVTEEVTKVEMAEYSLADGTKVMISALEVGGKVEMEDGTPAPMGEHQLMDGTSIQVDETGTIIEIASPKEDVVEEEPIQPVAPAQDNTAMVTELRDQKIQLETKIAELESKVKQGFAQVAELVEALSNTPTAEPTQKAANAFQSYVSTKDTKYERLEKYRNAILNK* |
Ga0114980_1000045550 | F051915 | N/A | MKFLNSIYGSWLKVFVSAILTMIVMKGDIYLITLKDCLNAGIISILPIIINYLNPHDKRYGK* |
Ga0114980_1000045552 | F002643 | N/A | MKYQQLNTLVASINAVIGNSESKTQKKLVKIYEKVKSHHESYQAQVEELRLDNASTDSNDILLLDEKGGYKFTKEAIKKLTAQVKELGEKEFEFKPIEVVNSSGLKEFTFLQDWTTGIAFITEEEEEL* |
⦗Top⦘ |