Scaffold Ga0114980

Basic Information
Taxon OID	3300009152 Open in IMG/M
Scaffold ID	Ga0114980_10000416 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009152 Open in IMG/M

Scaffold ID

Ga0114980_10000416 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	30975
Total Scaffold Genes	58 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	46 (79.31%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

30975

Total Scaffold Genes

58 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

46 (79.31%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403	(Source: UniRef50)

Taxonomy

All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → unclassified Caudoviricetes → Freshwater phage uvFW-CGR-AMD-COM-C403

(Source: UniRef50)

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Simoncouche, Canada
Coordinates	Lat. (^o)	48.2311	Long. (^o)	-71.2508	Alt. (m)	Depth (m)	2
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Simoncouche, Canada

Coordinates

Lat. (^o)

48.2311

Long. (^o)

-71.2508

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000368	Metagenome / Metatranscriptome	1223	Y
F018164	Metagenome / Metatranscriptome	236	Y
F020883	Metagenome	221	Y
F036663	Metagenome / Metatranscriptome	169	N
F053803	Metagenome	140	N
F064418	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_1000041610	F020883	GAGG	MEASFMITQVETTMSNYTNQYHRLGMQDLAIWQSLESIYSRPEEYDLVLTSTREEAFDRMVKDNWHVDMGDHFFGLDYETIDECVLDYVKANKLVTDTTEEEE*
Ga0114980_1000041616	F064418	AGAAG	LASEICAVYEGILVGKPRPTEIRLVAKLLDPDAENSEDAAALAIEIIEALDNSRLKRESFIVVAKLADWVPLQAWGEFSTRLQAEKFFPHLSAPGPDTGGKGAIARLENPDDLLKRIGAQ
Ga0114980_1000041628	F053803	AGGA	MAIDIELTLDETMDALRFIHLVRENKKQYEVVDKKFDRNNSSYSVNLMGQLGEMACGKGLGLQVDRSISPSGDNGHDLSTPLGKNIQVKTSTLDKLIFNAPELFVSDYAVLVQFFGDKQLPHVDSRFSILGWTTRELFLANHYKHDYGYGIRLVMDADQLQPIEVLINEVSRL*
Ga0114980_1000041634	F036663	AGAAG	LIGNYLPLVQPEERSPLVTQVRVALNVAGDDRLDAPLQEILKGLQHRYDIPAVGCINKATLDALAVAPPEW*
Ga0114980_1000041638	F000368	N/A	LAGSFYLEEKTMNAKFQAVTLSWFRAAASAAIALYLTGSTDLKTLGMAALTGFLGPVLKWLDGSSTDFGRGAE*
Ga0114980_1000041648	F018164	AGG	MAKVFRGPTYKYKPGREYDLWFVSYPIGKSVVKTGGVWKTIVVPQDSDLATYQRVLRGGYDNVITDAEASELTAAGYGDYVFNV*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114980_10000416

Overview

Ecosystem & Geography

Associated Families

Sequences