Scaffold Ga0114980_10000329

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10000329
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 33777
• Total Scaffold Genes: 88
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 57 (64.77%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (75.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F041242	Metagenome / Metatranscriptome	160	Y
F071987	Metagenome	121	N
F073105	Metagenome / Metatranscriptome	120	Y
F096668	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_1000032914	F041242	GGGGG	MTEPTKQWQDFLDPDAPLTEDAVWQAIADANDLDYSEIADGDLFEWL*
Ga0114980_1000032945	F073105	N/A	MTTTINITWHQPDERSQGREDSAWYTHSADHHDIVASVSNGERTVYIYSDGEQRAHLAYDPTDWSKGHEVIRYCDQWGDIKNDNDIYEASESGRLDWINNSWFDLYAEEQGWSDCVQHTLTEAIASATELLADDEYWETV*
Ga0114980_1000032972	F071987	AGGA	MTTTLLQRTKDAIADGKIIGDGHTIFNPDFYAPHFSEDELSKAKLIQTFKSDKSDHKSTIFGKDGKPMEKLKGVYNLTFLYWLCGALGINSHNDYNGRGSQADELARRIRKELA*
Ga0114980_1000032977	F096668	AGGAG	MGLIAFHTPEDGFTLNGVEVEIIWDDTPEATEGVRIIVDENAVRVTDILSDPDHSEHDMWSAWDDDIFYYCESEQEWKELLVTGHHDGWRVLQ*