Basic Information | |
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Taxon OID | 3300009152 Open in IMG/M |
Scaffold ID | Ga0114980_10000279 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 36331 |
Total Scaffold Genes | 46 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 21 (45.65%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F004740 | Metagenome | 425 | Y |
F014606 | Metagenome | 261 | Y |
F014953 | Metagenome / Metatranscriptome | 258 | Y |
F036674 | Metagenome | 169 | Y |
F063471 | Metagenome / Metatranscriptome | 129 | N |
Protein ID | Family | RBS | Sequence |
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Ga0114980_1000027910 | F014606 | N/A | MSIRTNIRTATANALTGASVVVTANILKGRNNTIASVSFPSAAVYAVQEQIEVRSLRPSDRLQYRQLSLMVDYFTAESGTYLIDDLFDTGSAAVEAAVLADPTLGGVCSDVNLTSVEYTIEPDEDRRWGVARHTFNCIYLTQD* |
Ga0114980_1000027940 | F004740 | N/A | MALDNPFIGIEQATLLALKTKVVSAIEACLLNQSYSLNGKSVSRADLGRLNEMLGQLQGAIDVGNGSTDTVTFASFNGL* |
Ga0114980_1000027945 | F014953 | N/A | MNNMTLDQALNNLYNAARMAPLNAEQHELIRKCAEQIAEALKPKEELKGE* |
Ga0114980_100002795 | F063471 | N/A | MYSNSAAVFRGDIAGVLEQSKDWESGLIGAKIMPVLNVPVRAGQYPSFQLKEGQLLKSDVKQRAVGAAYPRMVNSYNQETYTCQEYGIENPIDDTVTADVSRFFDAEVMAAKIAQRKLMLGHELRVSSAIFNATTFTATNSGTAYTTANIATFDVGLDVQDAIDRLLAKGESANNLKVVIPYAVWTRIRASTKFQNRLRGSGISSDSILNASTQAAADVFGVQEVLIGRASYDSAPEGVAFASANAWANTYIFVGSVSEGSAGYFGGGAGFTLNWSEYGPAFGVSTYREESIKSNIVRASQYVTEKVVNANAGQLVTTQYS* |
Ga0114980_100002798 | F036674 | GGAG | MSSVRDFDPTQLAADYLGILDQAGITFTYQGNTVTGIWSSARNAFSDFEDQRRSDSKFTIFLTTSQVATTPAVAQTLLRSGVTYFVEQVTLDAEGTGCEMDVCKVI* |
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