Basic Information | |
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Taxon OID | 3300009152 Open in IMG/M |
Scaffold ID | Ga0114980_10000244 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 38265 |
Total Scaffold Genes | 59 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (25.42%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (40.00%) |
Associated Families | 5 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
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F016772 | Metagenome / Metatranscriptome | 244 | Y |
F032917 | Metagenome / Metatranscriptome | 178 | Y |
F053824 | Metagenome / Metatranscriptome | 140 | Y |
F091274 | Metagenome / Metatranscriptome | 107 | Y |
F093196 | Metagenome / Metatranscriptome | 106 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114980_1000024413 | F032917 | AGGA | MLRKFAIFSLSSLLLCSCTTVTPDKVKDEIASYDATTPSGYDVQNSGFIGFTDDGRGLITPFGLLRYNTLIKAYKVRFKSFKGVELNENDGVTEFTDKLNNKLYIIDQQHLVYYAILNSWRKDGKEPDSIWDKTKDLIK* |
Ga0114980_1000024415 | F016772 | N/A | MKKLLPFILIPILLTSCATTNNGGNSTGGTVDPRSGVEAALPYIAPAVTLTCTVVLEQALSPDDKVEKAKLINHVATVVEALTQGSTPTPDQLQKALSDYLPADKAHWAKYIVAVKDIYAAQFARLNGDAKLGIDVLNAIAKGCRTATEEYVN* |
Ga0114980_1000024417 | F053824 | N/A | MLLLKMKGGMKFMSINYSNKDLRPKTFYVKMERSRNGEFTVKRARVLEQKNQYASTIRRVDARDLTRAIRRSGLQVA* |
Ga0114980_100002443 | F091274 | AGG | MEYVSISQAIKAAADLNTPSTEYLNNFLPAYRKYHKRQNVRRAVCKIGSGLAVFVVACLCYSSINNSNKLDINTASGGEMAQNNTHGKQVVFEGDVREVTDFIRKHVKEKTQTIGLKEHFDADVWGVYVEGEEKFRFYYQCLGHGRYSVFVIND* |
Ga0114980_100002445 | F093196 | N/A | MNNFIPYVVGLCLAGSIFYTVYSPHSSMVKQHIDSYGMDFEYVTPEGSCFTQNIEPIGHDSHKYILSLGKPAKPTNTEEPLYVMVGYTMKQVRVRYRSNALTSNNL* |
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