Basic Information | |
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Taxon OID | 3300009152 Open in IMG/M |
Scaffold ID | Ga0114980_10000069 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 64676 |
Total Scaffold Genes | 77 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 53 (68.83%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Simoncouche, Canada | |||||||
Coordinates | Lat. (o) | 48.2311 | Long. (o) | -71.2508 | Alt. (m) | Depth (m) | 2 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F001360 | Metagenome / Metatranscriptome | 714 | Y |
F015212 | Metagenome / Metatranscriptome | 256 | Y |
F021091 | Metagenome / Metatranscriptome | 220 | Y |
F056543 | Metagenome | 137 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114980_1000006929 | F021091 | AGGA | MDDWKNYTDKNGDFQLANFLYKSINELMKHSLDMGTLLSNDAQKLRAYKEQTKKLFKNKWLDVASALEHFDIIEKCECYLGQKEIYCDICKGSRYKISSYLSPDEMREVSTFVNATHDAELQIKLQKGLMKLLEEM* |
Ga0114980_1000006946 | F001360 | AGGAG | MSLAKFRKVGTKTGAGRFVVSPGIAPAAYLLPSAGLPTWYSDSEDDRFEIVITKGTILSVVADASGDARIVPANGTGSAVTWGDTMPASWDPLDGATPSYSSGATDTVSVELRSIPIGCAQYDLYRPFDKGTSQGAGFITHGYVEYPMVNLVNNDVTVGSLIKADHMGRPVVLSKNDCGSYPWLQVGKVVEVEKSATNFDDGLLSYMQLPSDPGALKTVYELTRSGSFSGKLGIRSNLDVNNVIGAFRVNLTL* |
Ga0114980_1000006950 | F015212 | AGGAG | MAIRYPSALDNLINPASTDTLNSNTVPHHQQHSDLNDAVEAIQTVVGINPAGSHLTVKDRIVAVEANVSIQSVLNGLTDVTINSVANGQVLRYNGSQWINYAESNLVDGGNF* |
Ga0114980_100000698 | F056543 | AGGAG | MKEMEWCGCMDVRSWKDGFADIFSRELVEGKRKGELYELFEVKSFEEFKDELSDIAWGVGRIVGGLVGKPYVRIIGDAIHYNKVVSRMNEYGCMRSKRFLIKGECPNK* |
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