Scaffold Ga0114980_10000001

Overview

Basic Information

• Taxon OID: 3300009152
• Scaffold ID: Ga0114980_10000001
• Source Dataset Name: Freshwater microbial communities from Lake Simoncouche, Canada to study carbon cycling - S_140806_EF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 199856
• Total Scaffold Genes: 221
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 140 (63.35%)
• Novel Protein Genes: 15
• Novel Protein Genes with Ribosome Binding Sites (RBS): 8 (53.33%)
• Associated Families: 15

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → Caudovirales (Source: IMG-VR)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Simoncouche, Canada
• Coordinates
  • Lat. (^o): 48.2311
  • Long. (^o): -71.2508
  • Depth (m): 2

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002398	Metagenome / Metatranscriptome	563	Y
F003750	Metagenome / Metatranscriptome	470	Y
F007310	Metagenome	353	Y
F008552	Metagenome	331	Y
F010161	Metagenome	307	N
F010618	Metagenome	301	N
F030427	Metagenome / Metatranscriptome	185	Y
F043405	Metagenome / Metatranscriptome	156	N
F051920	Metagenome	143	N
F061849	Metagenome	131	Y
F067747	Metagenome / Metatranscriptome	125	N
F072322	Metagenome	121	N
F093841	Metagenome	106	Y
F093860	Metagenome	106	N
F105155	Metagenome	100	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114980_10000001121	F061849	GGAG	MSVVNGLYNQILKSSVGFTVSGTSVYATIPWYPQSTIDELRITNVSGTAFTVSAFSILNTGAHYRNSTTDGKAHLIYRDGTDVNATAAESFIARWGFNPAIYHEQLYNRPFLNVAFTFTESRSNIALRISAIGKKALPLDYPRSDTQGIESIDDYRVLVGKAQTGTGGTAGTIYDVTGIAKGNGGENASQFNLNATTDYIYIGSRKKIDHWEFQVGTGLTAPANLLGQVWSGTAWSSFTVIDDTSTGNSDTMKFSGIVEGSGLGSSTWVPVKADFSANTLLPNDPLTVQQNRIIAGGYPIVVLPPNPERYWVRFNLSAVAADGLVTFNKILPVSETYETY*
Ga0114980_10000001134	F030427	AGGA	MKNILLSLVALCVATSAFAADPIFGPAKPPVKEGTGTFHAKSYGVEVKSVNDVKFVGIYDNKNGNGAVQKTLQSFSFQGLKFYTTATLSTNKNVDKAYAGASAMVEFGPVAPGLSVAAGVTVRGVELQRGFNVNNSYYPTVAVAVDPMTLVRNVMSTPAKAEKTVRNFVKQVF*
Ga0114980_10000001152	F010161	GAG	MKIYLEVWEMTKKNKMLYDALIDYVSYFYNCSDMPDSAKYNALKIFEVLQDEKIDVNDFIPVMRQIQFSLDLLAA*
Ga0114980_10000001161	F105155	N/A	MQNFLKTSAAKQLAAEIKYLEWDQVTFNFYHKSFKGYNFYKRNISLNYWQYTVVDDITSCTFMMYEKEAKRCLTG*
Ga0114980_10000001163	F010618	GAGG	MTLRELILKLQELEKKYEQYSQDTEVVIAVHSKNEFNPEVSLDYIDEVVHPALDTFSGYICRIVLCGEIEGED*
Ga0114980_10000001166	F093841	GAG	MPTLKIEKFIYMADGFYVYKMEEGYAVKDQFGYTLKTAKTVKTCENYVQLQLQTRRAAERYAIEKINQDKNQSRAV*
Ga0114980_10000001167	F002398	GGA	MIALISIFLLTALDPIKNFVSLKTYISENAKAHCYVYFINEDIPDFPRVNIIEKNKFDFFAYLDTIGIEHSKVGSYYFFNRKPK*
Ga0114980_10000001194	F008552	N/A	MSVMIISFEASASEDTTLFGYFSMEYDPEFFSDIKENLTDIPKNKPLAFKLDTDNVKLLQGAFHTIRRIICVPDIEQQKFTYVFKHNFKSGTAKKFKYAKLHIDKDYFYFTGHHENLDGTKPVEFQSLNFDVRFIDTIQNQFIKHQENMVN*
Ga0114980_10000001204	F007310	N/A	MRTVLWNNTERWFNHHHYELLIEDVTGFDLKKSLCEQSVKYMAKRLSETKYQRRFKTLYTIYENEYNALVEKFNNQADNNGKIEVA*
Ga0114980_10000001214	F003750	GGAGG	MTEEIINRTIQVFLYTGGIVAFWQITKHMPKALYTLLECITVMTCSVLLLTPFSMIIEYILGGNIDTTMMFVAGLATVSLLSTMWMVMVQSSRELQGKKQYKYVVL*
Ga0114980_1000000122	F043405	N/A	MPINNDILGIYKQVYVLTSGTAISYIVESANRNVSIDAQPKVLIAGSPKTRIMDIGGVTETISITAPMLIGGGAAYDGRALVGNKITEILNPATATLPILKSASYSISEGGGSVSVTLESDGNAASGNSGFYLVNSTTPHPSLNPVGTGGSGTTAFGPTRVARFYDFRAKIGGRQYFIQEANVDVNVETSKAYFINPYDFTNPNDGYRYSGGGGTVIPSVLGGFGISWAYGSQFPHIGVNGITISGKGKGAVVVGSTYASETTAGITTQTAGKTILASTEDVTFALEIAGGTGGNPGVVATWQDLIAGIGLSKSIINATAFSVSTGILTVEFDFMCYVV*
Ga0114980_10000001221	F072322	N/A	RRGKVMETVDFVNATEFFDGMELGHGESDEFLSKFTYGDIRTTFTLVSRGTFLSYLKTFITDCEDIYEKDVVMEALRDYNLSVDVRIKYVNIEA*
Ga0114980_1000000149	F067747	N/A	MRVVKLPPKPYHQDAKVSVSTSKDKLDKKEKISKFIKLVQPRYSQSYIKKITAAIIKYAAVFKVDPYVIASTAYVESEFKMTSRPCIGMMQLVRPSIRYYDPKRVYNPRTIEGNIAIGTKELSVHLRKHSRKGLPSRTAYRNMYRSYNGSYMKNRYSVKTMLVQTRLEHLSIDALKSKLGKGPIWK*
Ga0114980_1000000165	F051920	AGGA	MKFRILQAGNLNVAWLTIEEGNINIETGIRFMYCLYDYDMQPLERKNYQINGDDFANIGNSGKDTRIAILELLLVSLNAVIVKE*
Ga0114980_1000000180	F093860	N/A	MSKHVVFQPVDLGDDEVKDTVLWSATFHIHPDIEPTLPEEMLALVKNKNSINYPLAYWQKEFTNLGFVLDMDFPFCKEYAWDFILPDAVRITIQAKDLNTNFNQIIIPKNIARDILNEMKLPMFGKMHPEKFHKKLVQFIDLSQNDTALVENIFEALTELEDLCTECISYESFIEWKVS*