Basic Information | |
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Taxon OID | 3300009151 Open in IMG/M |
Scaffold ID | Ga0114962_10074767 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2162 |
Total Scaffold Genes | 5 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (20.00%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
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Location Name | Lake Croche, Canada | |||||||
Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 5 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F034567 | Metagenome / Metatranscriptome | 174 | Y |
F058818 | Metagenome / Metatranscriptome | 134 | N |
F066775 | Metagenome / Metatranscriptome | 126 | N |
F082590 | Metagenome / Metatranscriptome | 113 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0114962_100747672 | F066775 | N/A | MKKIENLEIIKAALIEKRSVLELACSALEKEAKEEKKAIFEKLFADELVSYVDVAVEMGYSGMYFKIGHKEIGSINERGYGATAKELYFNTYSTTCDSEFEFKRLIFNGKIAERMLNDIDSIKEAFAIPFSKKEELDALTREYNILSGEIKQKEYQMHEVRRQDIIDKLNGEGIEWTTNKCFEFNRQWTSYLVKKVRIVKATKSGKTVDLEVTYAQHDWVYDEEDNGKRVEKEDRIATHEGIKMEYVMGNFRDLIYK* |
Ga0114962_100747673 | F058818 | N/A | MIKELKKLQNILHDMAAELYGDLWIMNDKFWNSPTERQLREVTMHLIDLGETLDAADEQIEAAKIIAKKFGIELPPED* |
Ga0114962_100747674 | F034567 | GAGG | VFNYYDYINHYGNRMFAIAGVKAMPARYCSILFTGSYDECMERLDPKGLEGSVEDIQKRVAFRS* |
Ga0114962_100747675 | F082590 | N/A | MERKKIKVMIEKKLFSDTITEEQYDKLTSRTIAYERKPAYPDDIHTSINFNELHESVREIVSNLPIVEFPGSFYDYFLDGNQQFYLVTYKEKIFLVDTQGYDYARYVIQLKDLVILEKGDTMQMKSHPGMVEEIISMLKHMDVDGETMEHIIRSVGMEEQMLRQLFLTGNSRFVDDLIGERECGV* |
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