Scaffold Ga0114962_10004349

Overview

Basic Information

• Taxon OID: 3300009151
• Scaffold ID: Ga0114962_10004349
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 11283
• Total Scaffold Genes: 15
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 10 (66.67%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014848	Metagenome / Metatranscriptome	259	Y
F019477	Metagenome / Metatranscriptome	229	Y
F044486	Metagenome / Metatranscriptome	154	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114962_100043492	F019477	AGGAG	MGHWEFGEFRIGRLFHCNGNDYIKQSTRTARMLSNGRIFYFGKREVIHAIAW*
Ga0114962_100043493	F044486	GGAGG	VLDNVLKWSGMAFVIAGALCTSFRIDPLNIILLNLGALVYMLWALRIREMNLVIVNAVLLAIYAVGLMFSPG*
Ga0114962_100043494	F014848	AGGAG	MQHYDHLATYEREGFDIIVDKTYEDMHPRDTFDDSCHNIDEICEKIDNGTYEWFSLRVRVLVEGLELSREHVGGCLYYDSREVLTDGTAEDLIDSAMTDAKKQVYRLSKVFAGLSEQVDREGACA*