Scaffold Ga0114962_10001795

Overview

Basic Information

• Taxon OID: 3300009151
• Scaffold ID: Ga0114962_10001795
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 18311
• Total Scaffold Genes: 36
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 25 (69.44%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F008860	Metagenome	326	N
F040987	Metagenome	160	N
F093146	Metagenome	106	N
F096503	Metagenome	104	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114962_1000179515	F008860	AGG	MSSFVKSDTRTPVPGDIVFSHSDGWMAKCIRFAERLRWRRGSYWNHVCVISRVDPDGTAYVIQAQLKGVAEARLDSVGHYVVLEPPVGVNRNKVLAFTKMQVGSKYGILSILSVVFDIISPDWFPSMRMPNTWICSAVTGEALRYGGFLMNWDDVYCITPSQLFDSLVE*
Ga0114962_1000179523	F096503	AGGAGG	MIKMSYRQGRKIVWGSAAIVGLYVDVTATGGISFWVAVYGLGTAVVVATLLAFITKR*
Ga0114962_1000179530	F040987	AGGAGG	MQSTTLKRGPEERKVTLYKNGSAFLITCEVLTSNFHKEGHSEVLYTPDTEAQAEFLYGGAVRFLQGYQYEVVSECLA*
Ga0114962_100017958	F093146	AGGAG	MEYPTEIPSGAKTVTTHEGWTLSYSVDTTAPFAINAWNVTSPYPTNEPFWHQPHDLDGSDWADEATAQAFADKWVVDNFVTPPAPAE*