Scaffold Ga0114962_10001413

Overview

Basic Information

• Taxon OID: 3300009151
• Scaffold ID: Ga0114962_10001413
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 20726
• Total Scaffold Genes: 47
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 33 (70.21%)
• Novel Protein Genes: 6
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (66.67%)
• Associated Families: 6

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F007163	Metagenome / Metatranscriptome	356	Y
F008554	Metagenome	331	Y
F037059	Metagenome / Metatranscriptome	168	Y
F048781	Metagenome / Metatranscriptome	147	Y
F082065	Metagenome / Metatranscriptome	113	Y
F098538	Metagenome / Metatranscriptome	103	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114962_1000141316	F007163	GGAG	MTLEDLQYIFEYQIEEGTEKLYFMLSDGAGHPLIQRHPSDDLAGLLPMLDSFQYTGHNVMPRFKK*
Ga0114962_1000141318	F048781	AGAAGG	MSGWNTIERIRRLEEQIDQLGFKFAKSKHSDWSDDHGALSLKPKDPDVLPIYSRDAELFVGSLERLEDWLAGVRWAREYDMMLRLSDEKKREAAEQKEKNRQLMRTLKEGKRVDGIEK*
Ga0114962_1000141322	F008554	GGAGG	MARNSIEDEIADNLGNEMAREIDREILWGMLEGIGWCRVMLPRLIDNNHAIDITHWLEDNCKNSFERNGRDFMFESLQDANWFRLRWGSV*
Ga0114962_1000141341	F037059	N/A	MENNLMTYLFNNNMEVANDVGNPLPITGNVTATIGNIITVVTTEDAGDKYSFNNHAANATRGWTMDNTMRPVVSFQNGSADAADVIKILEYEIGNNNANQSTIVYEWYEGPLTIAGAAIPSWTIFGVHSQYRVYQDQYSSNQGNTFTVPTGTYMRHSGIIIGKNTSGDEGPVSLYGGNSRNMLTLCMRRVDNATKLDVWFAFTIRELA*
Ga0114962_1000141344	F082065	N/A	MKKLLLAVVFVSLTGCSVISSIKDQIPSGWDANQSQVVTDMQQMTRHIDCTGDLKTQLHSLFMKVEWYDIYATTKNTRDMAKLDQVMLTTIREFQERVDKGAVSAIYCDMKKKVLIQQADVIAKTVQGRF*
Ga0114962_1000141345	F098538	GGAG	MSDQLIAVASSGDQWAAERAQYALQISDAVASGQMSKEEATEVLQDMIATQQLQEQAQADQVKAALFFGITNLISMYV*