Scaffold Ga0114962_10001336

Overview

Basic Information

• Taxon OID: 3300009151
• Scaffold ID: Ga0114962_10001336
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 21365
• Total Scaffold Genes: 43
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 31 (72.09%)
• Novel Protein Genes: 5
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Associated Families: 5

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000961	Metagenome / Metatranscriptome	820	Y
F005737	Metagenome	391	Y
F011282	Metagenome	292	Y
F025214	Metagenome	202	Y
F091631	Metagenome	107	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114962_1000133612	F000961	N/A	MEIDPVKYGVLWQKVQDYERRFDQMETKIDKLESSIEKLVALANQGRGGFWMGMALVSALSSAVGYISHWVGKN*
Ga0114962_1000133618	F011282	N/A	MKKFKNIVVITGTYKTRDGQEKKRYQTIGSVFLDDNENLKIKIDSIPIVDGGWAGWANCYDLEEKTNTGARDDIPF*
Ga0114962_1000133626	F005737	AGGA	MFEIEKYTKPTDWTAIAVYIVAIIAIVVVALDIFVWRP*
Ga0114962_1000133633	F025214	GAGG	MTTKLYLTKDGKAKNLALLTSTELLKIQETLRKTEAKEWIRRYRLKVKETGKQQAQAWWLGVKEAIEKKRGQDGLNTLIAEMQRQRHDDNSL*
Ga0114962_1000133638	F091631	AGGA	MANLMKREPKNYGVTASIKGDSTASDSTGEKMSSKMNIPAAKTNMTGADKKFDGGRSNGVCYSHDRKSSQ*