Scaffold Ga0114962_10000455

Overview

Basic Information

• Taxon OID: 3300009151
• Scaffold ID: Ga0114962_10000455
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 36359
• Total Scaffold Genes: 74
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 57 (77.03%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F014848	Metagenome / Metatranscriptome	259	Y
F041568	Metagenome / Metatranscriptome	159	Y
F070099	Metagenome / Metatranscriptome	123	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114962_1000045511	F041568	AGGAG	MFTTDNQVALKAELDQMYADQGAAFTSGYLNSMAQEMLNLMPKRQQKAFIKQVATFNGRQLVTVKNCLTGADVEIRREDRGTVNDPSMERFHSM*
Ga0114962_1000045520	F014848	AGGAG	MMQRYYDELATYERDGFTVIVDKTYEDLHPRDCFEADDIDEICRKIDNGTYDWFMLRVRVMVEGLELGSSYVGGCLYSDAREVLTDGLAEDFIWEALKEAKPKVYALKQKFAELSDMVDREAVTS*
Ga0114962_1000045562	F070099	GGA	MTTDIVKEFCQHHRINILDTNKRASRYHKVNINYFHDPLDFNRVYEDIVFDSEPLYTVEIAESELERVANFESEVFNNMKKQGHYRMFETLMEQKERERYLRDKYPAVKKAYEQYSLMLKLSESGEL*