Scaffold Ga0114962_10000409

Overview

Basic Information

• Taxon OID: 3300009151
• Scaffold ID: Ga0114962_10000409
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 38402
• Total Scaffold Genes: 56
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 35 (62.50%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F006141	Metagenome / Metatranscriptome	380	Y
F024263	Metagenome	206	Y
F029985	Metagenome	186	Y
F075664	Metagenome	118	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114962_1000040915	F075664	GGAG	MNFRSWCREKWYEHVDELISYGLEPQFTAQEYFDRYKFWLKREFKHQQGVR*
Ga0114962_1000040920	F006141	GGA	MVLEILLYGFVTAFGWWGANHYVIEPYFPPPIEKKVEQK*
Ga0114962_1000040925	F024263	AGGA	MSVKIEASDSTLPSLDSLKTTALPMHKLYFELSSVDTWYTIMREARAQFGKNWRSQAHVKRRLEHAALWRLNDQAERVWFEVPDPKFGTWIAIKHAVRQVEPTGK*
Ga0114962_1000040946	F029985	GGA	MKKYGAIYRTVILVLLLILCGSAMVSSSPMYGGDRPSVAREFTPKQVQLATGTAECVRTAWIGDVNNRTVICVEWRTVKKDGK*