Scaffold Ga0114962

Basic Information
Taxon OID	3300009151 Open in IMG/M
Scaffold ID	Ga0114962_10000343 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009151 Open in IMG/M

Scaffold ID

Ga0114962_10000343 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	40405
Total Scaffold Genes	50 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	31 (62.00%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Scaffold Components

Scaffold Length (bps)

40405

Total Scaffold Genes

50 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

31 (62.00%)

Novel Protein Genes

3 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

2 (66.67%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F004863	Metagenome	420	Y
F006099	Metagenome	381	Y
F056418	Metagenome	137	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0114962_1000034319	F004863	AGGA	MKLMVAGCSFSAVSQTLPGTAWSERLAEKLGGWELVNLARQGCSNGGIRIQMDEIRRQQPDFAVIGPTFWDRMEIPANSVPYDWTQAPSAGENPPLERHLQNRKLGNGYRREDGIRNVNYGREPSNMICETIFTLAENFEHPYRMGRITKQAQTGVRHWIDSIYDNAWKKQQDEWMIREGVITMFLDDIKFLVLPNLLWPFDPANTTLWRQAFPELVPDHYINLDESRSPQAICGNNPFRGEDPGYHSSAAGQEIIAENFYQHWLTHFK*
Ga0114962_1000034321	F006099	N/A	MTSAKILYLARYRVPHAIMSLQPEFTKHLIGVDRTCIASPVPKDELWPVFEKYGIDTGNFDYAPDSEIYRLYPEVNNWVFSDDYRGWWLRQQAIKLSFLDYLDYDLMIMHDPDCIMIQDYQPIVDGKLNFMVLENERHSWGYYETIRNAFGFDRLTPHCFISEYVPVFKEDVTAMREFLEQKHKCNWLDALIENCPGEPTVPPWGKGELIRWLSEYELIGNWTMSRREIHMQPQRRYMYDDMTKIGGFDPDYHTAVCDAVPDLSRSVKFDWDTKKVVDFDRWMDLIRQKITTASGVTKVLAEDQCPGQPNVKWLRRSAEDDRHLTSKHGNNYLAYQHKQQ*
Ga0114962_100003435	F056418	GGTGG	MRSESRSSLYYNAYEYAMTWQQDEIGCIRSLDQKKMLSHIRMRMDYEHSRNSLYKPYGENFESKFTTRCRDNLEGMRALLATETQPKKMVFFNNFLTVYTNNLGLHGRLMACDWIESVDLKRAELNLPPDTILLKNPQYQYRTYFRGRSLGKTQKARLATWVTTQGDDVSASKSLRTFLELDDRTNRVYWWRNDATESYYYIEHNSLQYETMLSMVCPGMVRKTLPIVKKQ*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114962_10000343

Overview

Ecosystem & Geography

Associated Families

Sequences