Basic Information | |
---|---|
Taxon OID | 3300009151 Open in IMG/M |
Scaffold ID | Ga0114962_10000175 Open in IMG/M |
Source Dataset Name | Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
---|---|
Scaffold Length (bps) | 55887 |
Total Scaffold Genes | 71 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 48 (67.61%) |
Novel Protein Genes | 9 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 9 (100.00%) |
Associated Families | 9 |
Taxonomy | |
---|---|
Not Available | (Source: ) |
Source Dataset Ecosystem |
---|
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling |
Source Dataset Sampling Location | ||||||||
---|---|---|---|---|---|---|---|---|
Location Name | Lake Croche, Canada | |||||||
Coordinates | Lat. (o) | 46.8319 | Long. (o) | -72.5 | Alt. (m) | Depth (m) | 5 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F000652 | Metagenome / Metatranscriptome | 959 | Y |
F007524 | Metagenome / Metatranscriptome | 349 | Y |
F007580 | Metagenome / Metatranscriptome | 348 | Y |
F010760 | Metagenome / Metatranscriptome | 299 | Y |
F014848 | Metagenome / Metatranscriptome | 259 | Y |
F018539 | Metagenome | 234 | Y |
F020008 | Metagenome / Metatranscriptome | 226 | Y |
F041568 | Metagenome / Metatranscriptome | 159 | Y |
F054873 | Metagenome | 139 | Y |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0114962_1000017525 | F007580 | AGGA | MKFFVSIAKLIDFVYMFFKNHLGHLSAHTLGWITIVLLHFAAVPTLLAMILAQSDKLPPYDLMIFVWAALTTLFFKSLIEKNFLYVSTICVGFIGQVVMLGMIVFK* |
Ga0114962_1000017553 | F018539 | AGGAG | MLSNAFNTLAKAKLVYNKKRELYKLVVAFNVHTKQKDNGDIVHIFPTQAKCAYVSGDIIYEELQAEVNRLTETAKKQLRTNNIEFV* |
Ga0114962_1000017554 | F007524 | AGGA | MRKVTKSHALAINKLMLPLICSVSHPSYVCEDADMGYYNMLVGDIAHNVSALSVFNSTLDAGVLHNSIMLQDTSPREHFFTVLKYIEDNALINANKFCCS* |
Ga0114962_1000017555 | F020008 | AGGAG | MGQYANTVNAYAMSAARAKVYTMQNTMQSYGQTAYMLNVSTAKFRRDIEAKKVKFIAKLEKEKLAKMQAEIAHLQAKHSVA* |
Ga0114962_1000017557 | F041568 | AGGAG | MFSTDNQRSLKAELDQMYADQGAAFTSGYLNSMAQEMLNLMPKRQQKAFIKQVATFNGRQLITVKNCLTGVEVEIRREDRGGPCDPSTERFHSM* |
Ga0114962_100001756 | F054873 | GGA | MRAREFTINIPINIRINGDGQPEIDMGNDAPIDPSKPKEDPVMVPPLQQQIELQKAEVGKNSPIIHDLTQDEVDPETKELP* |
Ga0114962_1000017561 | F014848 | AGGA | MTRYYDTLAEYERDGYTIIVDKTYEDIHPSDLFDDSEHDVKQLCQDIECGNLDWFMLRVRVLVEGLELAEEFLGGCLYTDAREVLSDGCAEDIIDQAMTHAQGRVYALSRKFTELSYAHDAVPANEQY* |
Ga0114962_1000017565 | F000652 | AGAAGG | MKAYVTTILRQEIEVPEGTSREDVLEFLAENQSFGDAFLGVSDMTQRFRIVGITVVEEEITELGEESYDA* |
Ga0114962_1000017568 | F010760 | AGGAG | MLDISKIVKTYSGKIGCMCGCLGKYSYTQDGATNHGPGYNVQNSVNERSVKIIAKKVLANPNVQWDGDIAYVEDRVGNRMQAIYFKETV* |
⦗Top⦘ |