Scaffold Ga0114962_10000175

Overview

Basic Information

• Taxon OID: 3300009151
• Scaffold ID: Ga0114962_10000175
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 55887
• Total Scaffold Genes: 71
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 48 (67.61%)
• Novel Protein Genes: 9
• Novel Protein Genes with Ribosome Binding Sites (RBS): 9 (100.00%)
• Associated Families: 9

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F000652	Metagenome / Metatranscriptome	959	Y
F007524	Metagenome / Metatranscriptome	349	Y
F007580	Metagenome / Metatranscriptome	348	Y
F010760	Metagenome / Metatranscriptome	299	Y
F014848	Metagenome / Metatranscriptome	259	Y
F018539	Metagenome	234	Y
F020008	Metagenome / Metatranscriptome	226	Y
F041568	Metagenome / Metatranscriptome	159	Y
F054873	Metagenome	139	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114962_1000017525	F007580	AGGA	MKFFVSIAKLIDFVYMFFKNHLGHLSAHTLGWITIVLLHFAAVPTLLAMILAQSDKLPPYDLMIFVWAALTTLFFKSLIEKNFLYVSTICVGFIGQVVMLGMIVFK*
Ga0114962_1000017553	F018539	AGGAG	MLSNAFNTLAKAKLVYNKKRELYKLVVAFNVHTKQKDNGDIVHIFPTQAKCAYVSGDIIYEELQAEVNRLTETAKKQLRTNNIEFV*
Ga0114962_1000017554	F007524	AGGA	MRKVTKSHALAINKLMLPLICSVSHPSYVCEDADMGYYNMLVGDIAHNVSALSVFNSTLDAGVLHNSIMLQDTSPREHFFTVLKYIEDNALINANKFCCS*
Ga0114962_1000017555	F020008	AGGAG	MGQYANTVNAYAMSAARAKVYTMQNTMQSYGQTAYMLNVSTAKFRRDIEAKKVKFIAKLEKEKLAKMQAEIAHLQAKHSVA*
Ga0114962_1000017557	F041568	AGGAG	MFSTDNQRSLKAELDQMYADQGAAFTSGYLNSMAQEMLNLMPKRQQKAFIKQVATFNGRQLITVKNCLTGVEVEIRREDRGGPCDPSTERFHSM*
Ga0114962_100001756	F054873	GGA	MRAREFTINIPINIRINGDGQPEIDMGNDAPIDPSKPKEDPVMVPPLQQQIELQKAEVGKNSPIIHDLTQDEVDPETKELP*
Ga0114962_1000017561	F014848	AGGA	MTRYYDTLAEYERDGYTIIVDKTYEDIHPSDLFDDSEHDVKQLCQDIECGNLDWFMLRVRVLVEGLELAEEFLGGCLYTDAREVLSDGCAEDIIDQAMTHAQGRVYALSRKFTELSYAHDAVPANEQY*
Ga0114962_1000017565	F000652	AGAAGG	MKAYVTTILRQEIEVPEGTSREDVLEFLAENQSFGDAFLGVSDMTQRFRIVGITVVEEEITELGEESYDA*
Ga0114962_1000017568	F010760	AGGAG	MLDISKIVKTYSGKIGCMCGCLGKYSYTQDGATNHGPGYNVQNSVNERSVKIIAKKVLANPNVQWDGDIAYVEDRVGNRMQAIYFKETV*