Scaffold Ga0114962_10000044

Overview

Basic Information

• Taxon OID: 3300009151
• Scaffold ID: Ga0114962_10000044
• Source Dataset Name: Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 93324
• Total Scaffold Genes: 93
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 75 (80.65%)
• Novel Protein Genes: 7
• Novel Protein Genes with Ribosome Binding Sites (RBS): 7 (100.00%)
• Associated Families: 7

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location

• Location Name: Lake Croche, Canada
• Coordinates
  • Lat. (^o): 46.8319
  • Long. (^o): -72.5
  • Depth (m): 5

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002977	Metagenome / Metatranscriptome	516	Y
F009462	Metagenome / Metatranscriptome	317	Y
F011665	Metagenome / Metatranscriptome	288	Y
F015338	Metagenome / Metatranscriptome	255	Y
F026556	Metagenome / Metatranscriptome	197	Y
F026795	Metagenome / Metatranscriptome	196	Y
F032649	Metagenome / Metatranscriptome	179	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114962_1000004418	F032649	GGAG	MDERIEKAFAVANYSATLSNQRRIISEEYQQKLVYYANGATFKVSPDLIAFIKTVLDLGHTSDIPFLDANNFPVVIENVQEFLDNIVSVYFEALNEYTVKYSEIKKKRKIADIVEL*
Ga0114962_1000004428	F015338	AGG	MALKTGKPNPLNYFGLRRVEFACPHFKYTYLDRYNPTMLKSIDLWIRHHLNNRYYIGQGIALDNTNTIVYNTQIGFESEKELSFFTIACPHLSQR*
Ga0114962_1000004434	F011665	AGG	MQNQINLTPITQFAHLLRAAELSQSKEVKIPIQQARLMNLALVELMEQVRQDYESMFNALKSHVQQEEVQIEIDGGGFEENKS*
Ga0114962_1000004440	F002977	AGGAG	MKSLEIQVPAEGIMQTNDWGDSKVYRVTCNCGASDHDHHVWVEADDHEVSVTIYTTVKSNWWSKTRWHAVWTLLTKGYIDTESTVIMSRQQAFNYANTLLSAVEDVESFRNTRQNKAERAKVTKLAEQGDCE*
Ga0114962_1000004444	F026556	GGAGG	MTSLTGSLIKLGFGIALIVVAVAFGPIIGIWALNTLFPQYLNIQLTWQTWLAFNILFGGSSIIKLGTRK*
Ga0114962_1000004447	F009462	AGGA	MKLHESIKDTYTETIIKEHEGFRLVLKKHEVLMPKGLFSVDMEQQCLKDGKITDTAVYNFFMTKEEMATLAQALTA*
Ga0114962_1000004452	F026795	GGAG	MVHLSNIKIEAIMAKNYKEVSYFSTRPDIVKLFEDLEAFHNWCRSELCEFNEGHLYNRESWQWRNFDKSRRPKKPFTGERKPYLGKNPRYNSNDRIPS*