Scaffold Ga0114962

Basic Information
Taxon OID	3300009151 Open in IMG/M
Scaffold ID	Ga0114962_10000040 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009151 Open in IMG/M

Scaffold ID

Ga0114962_10000040 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Croche, Canada to study carbon cycling - C_130820_MF_MetaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	94008
Total Scaffold Genes	99 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	72 (72.73%)
Novel Protein Genes	6 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	5 (83.33%)
Associated Families	6

Scaffold Components

Scaffold Length (bps)

94008

Total Scaffold Genes

99 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

72 (72.73%)

Novel Protein Genes

6 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

5 (83.33%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater Lake → Freshwater Microbial Communities From Northern Lakes Of Canada To Study Carbon Cycling

Source Dataset Sampling Location
Location Name	Lake Croche, Canada
Coordinates	Lat. (^o)	46.8319	Long. (^o)	-72.5	Alt. (m)	Depth (m)	5
Location on Map

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Source Dataset Sampling Location

Location Name

Lake Croche, Canada

Coordinates

Lat. (^o)

46.8319

Long. (^o)

-72.5

Alt. (m)

Depth (m)

Location on Map

Zoom:

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002977	Metagenome / Metatranscriptome	516	Y
F003080	Metagenome / Metatranscriptome	508	Y
F009462	Metagenome / Metatranscriptome	317	Y
F011665	Metagenome / Metatranscriptome	288	Y
F015338	Metagenome / Metatranscriptome	255	Y
F024559	Metagenome / Metatranscriptome	205	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0114962_1000004032	F015338	AGGA	MALKNGKPNPLNYFDLRRVEFAAPHFKYTVIEKHTPTFIKLVNQWIMNNLNNRYYIGQDLALDYTNTIVYTTRIGFESEKELSFFTIACPHLQLR*
Ga0114962_1000004037	F011665	AGG	MQNQINLSPVTQFIQQVRSAEQAQSKEVKMSLQQARMLGLALAEMMDKMNQDYESMYSALKRSVDSEVISVEMDGGGFELPK*
Ga0114962_1000004042	F002977	AGGAGG	MNYQMPAEGILKHNDWGDSKVYRVTCECGSSECDHNVWVEAEDTGVTVTIYTTTRSNFWTQTRWHHIWTLLTKGYIDTQATVCLKAQGALNYAETLKLAIDDVEDFRKKNVKN*
Ga0114962_1000004043	F003080	AGGAG	MTTAKELTDQLINRAKNLQEFVVEREFNNVPLNGVIKFSIQHTAGEPARIFVPALTQEEAEQMVDEWFEEGVE*
Ga0114962_1000004050	F024559	GGAGG	MTSALIKLILGIILIVFAIAIGPLLGIWSLNTLFPILHIPYTWETWAAFAILLGSASGLRFGTSK*
Ga0114962_1000004052	F009462	N/A	MKMELHESIRNTYTETVIKDHEGFRLVLKKHEVLMPKGLFSVDFEQQTLGLDGEVRDTAVYNFFMTKEEMATLATALTA*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114962_10000040

Overview

Ecosystem & Geography

Associated Families

Sequences