Scaffold Ga0114918_10082931

Overview

Basic Information

• Taxon OID: 3300009149
• Scaffold ID: Ga0114918_10082931
• Source Dataset Name: Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 2033
• Total Scaffold Genes: 10
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (30.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location

• Location Name: Baltic Sea
• Coordinates
  • Lat. (^o): 58.622
  • Long. (^o): 18.254
  • Depth (m): 437

Associated Families

Family	Category	Number of Sequences	3D Structure?
F027756	Metagenome / Metatranscriptome	193	N
F036564	Metagenome / Metatranscriptome	169	N
F044916	Metagenome / Metatranscriptome	153	Y
F064403	Metagenome / Metatranscriptome	128	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0114918_100829315	F044916	N/A	MGKKKVDKSRIEKGIEKEEKTFALMAKKIVDAIKDEKELRIFAKTSLEMLYKDNPNLFADHTKLKLKKK*
Ga0114918_100829316	F064403	GGAG	MTKGIIRHIEPREMILTKLKQSYLKEHPATLVDRILGYLNNLTDFQLCELYSEKYETNPKYIAEQFEFNF*
Ga0114918_100829317	F036564	N/A	MKIRQNKKMKLGRIYLDLKYIVDMDNDDMVAHAIEALYEDLMQGVKYGNITDWIDVVEDKNATEDMIPEFLLEKEND*
Ga0114918_100829318	F027756	N/A	MKIEDLVDRKILYVNYPINKFAVQEGKVSEISPSKKCIKINSDWHIADNIRIIELFSENERPKLGFGLTKI*