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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300009149 Open in IMG/M |
| Scaffold ID | Ga0114918_10010086 Open in IMG/M |
| Source Dataset Name | Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 7639 |
| Total Scaffold Genes | 26 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 8 (30.77%) |
| Novel Protein Genes | 6 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (33.33%) |
| Associated Families | 6 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli) |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | Baltic Sea | |||||||
| Coordinates | Lat. (o) | 58.622 | Long. (o) | 18.254 | Alt. (m) | Depth (m) | 437 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F013467 | Metagenome | 271 | Y |
| F036024 | Metagenome / Metatranscriptome | 171 | Y |
| F043619 | Metagenome | 156 | Y |
| F062176 | Metagenome | 131 | Y |
| F066274 | Metagenome / Metatranscriptome | 127 | Y |
| F077978 | Metagenome / Metatranscriptome | 117 | Y |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0114918_1001008610 | F066274 | N/A | MILELTSEELGWVKYALIRASATLQGRDKDMTLKEERKLLKIVNKIEKQEK* |
| Ga0114918_1001008612 | F013467 | GAG | MTVGLLKNWVWCEECLEWKDAGDEVTFVSIEEDSFGQDLMTFECDRCTKTNINNIISSPTRPKGA* |
| Ga0114918_1001008613 | F043619 | N/A | MIEEQYWKRANGEVIAVADMNKHHARNVLRKMIKESRRRGLDVLEMRDKIRLISGMLDDIRSELL* |
| Ga0114918_1001008619 | F077978 | N/A | MFQHKEMNDCQKMVNRIFICLVIVVLAIFLTGCNTTKWEWLPEKDRTMTTSPFARGAEEPSETVDVLKVSF* |
| Ga0114918_100100862 | F062176 | GGA | MVYEVHITTVNKNFSYRVKAENVLEAESEALEKLKKDVSKDHITAGQYSIEHIVNLKEA* |
| Ga0114918_100100863 | F036024 | N/A | MGMTTEYTMKRIGNEDTFLKLDEATRICQAKVAAYISDVKMEDGEEAIDDYAWHIVTPERFEKDWENNENLKKTDEIKTKYKNLAKNNRVLFFEVDWN* |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |