Scaffold Ga0114918

Basic Information
Taxon OID	3300009149 Open in IMG/M
Scaffold ID	Ga0114918_10000180 Open in IMG/M
Source Dataset Name	Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300009149 Open in IMG/M

Scaffold ID

Ga0114918_10000180 Open in IMG/M

Source Dataset Name

Deep subsurface microbial communities from Baltic Sea to uncover new lineages of life (NeLLi) - Landsort_02402 metaG

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	51337
Total Scaffold Genes	45 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	7 (15.56%)
Novel Protein Genes	10 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	3 (30.00%)
Associated Families	10

Scaffold Components

Scaffold Length (bps)

51337

Total Scaffold Genes

45 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

7 (15.56%)

Novel Protein Genes

10 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

3 (30.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Ecosystem

Environmental → Aquatic → Marine → Oceanic → Sediment → Deep Subsurface → Deep Subsurface Microbial Communities From Various Oceans To Uncover New Lineages Of Life (Nelli)

Source Dataset Sampling Location
Location Name	Baltic Sea
Coordinates	Lat. (^o)	58.622	Long. (^o)	18.254	Alt. (m)	Depth (m)	437
Location on Map

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Source Dataset Sampling Location

Location Name

Baltic Sea

Coordinates

Lat. (^o)

58.622

Long. (^o)

18.254

Alt. (m)

Depth (m)

437

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F004606	Metagenome / Metatranscriptome	431	Y
F008190	Metagenome / Metatranscriptome	337	Y
F015210	Metagenome / Metatranscriptome	256	Y
F029447	Metagenome / Metatranscriptome	188	Y
F041804	Metagenome / Metatranscriptome	159	Y
F042621	Metagenome / Metatranscriptome	158	Y
F059985	Metagenome / Metatranscriptome	133	N
F059988	Metagenome / Metatranscriptome	133	Y
F067802	Metagenome / Metatranscriptome	125	N
F080618	Metagenome / Metatranscriptome	115	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0114918_1000018010	F004606	GAG	MKAHRIFTKGQTVYCLLSSFSRPNVLLPIKGLIVDTQWDPINPLYKIRIIKMYDNMKYLKSNFFDMNFKYEFDNRARKMPLKQEDFKNVKSLEDRFDDSDRERLYVIVESVMCKKTKNDLQGLFEKVQFYIISKNLKEIRDISSRPFFKGSLSTDSSQEFDVRFKRGWEDKFKGRDINIDKYLNSLG*
Ga0114918_1000018012	F029447	N/A	MNVKSLTLKNKLIIDKTGEGYWDLTAPSFIYDSDLGVKALHYVTVDQVGRIDKISEVYYGSGEFVDALCVVNNIFNPFSLNEGDILVIPNLSRKDLVYKRPNPAARPNATQAAYVDTGRQSGKDQARIQRLIEKAKSSEAGVKQPMPPNMLQPGQAAKTYEGGKIQLGTNLPSRNTKAK*
Ga0114918_100001802	F015210	GGAG	LLIYPFHISPVVREKKLTNIYCMELFEKYKKWGKDITIFDVDDTLIVTKSKIKVFNPKTGYEIDLTPQEFNTFKTKPHDKFDFNDFRDLEILKAGKIIDWVFNILKRTISKGTAVGIITARDDSKLIYDFLLHNGVDVNPDFIFAINDPNLGFTGSTAQKKKEGFMKFVEMGFRNFKFFDDDRENINIANSLNKELPDIKMNATLIKQKWIPNFDDFN*
Ga0114918_1000018020	F067802	N/A	MIKEIYSRDVDAPKYNDDVIEVTDQLQQLILKIENCLFTRKGDVLGSPNMGCNLDDLVFSLVLNESVIAQKISSQIQTYCLNSSSSAFGIDVRVSFYSTIDRNGCLVDIYVNEERVIGALF*
Ga0114918_1000018022	F059988	AGGA	MNKFTTRRTGMPSVYKAAYEEGWKLKNLGNDYGENLMKNSFSNYMFRNERLRTFIDTYLKPIMVFWINKVKYLRIFYNFGVPKDYQKIN*
Ga0114918_1000018023	F080618	N/A	MGNWKHLNFFDKQGKYLNFDYNETEDIWSGTMYLPAVSIGLFEVGQLFILEEFVNKNTNLKQFGFPHGIEVATGTTGSTGGICNWTAEWETSDPTEIFLFQFDMDFDTGTQSALVQEVDGPPLVVITELEIPLDSDSSESVNPEGYTVTDKITSSSLQLNFAIRSETENTFERTLLIRDQCTQNIIAEVLVWGETIGEDERLRVMTQNMGYNILESDSSVFRNTNIKEILPNFEEVNLKRKEIMLEGSNIYPWIGSYKALVNAIKFFGYDTLKVREFWKNVDANSPMFGKYIMSNNIDIFDPAVQLNDKKITLPNKRFRKTSLFSLVYRINNIVPDKFDEESLPITTENYDFTIEEILIKLFGLKKKLENEFLPLNARIKDITGEADFFGLLEVTNTISRNDKREIVAGIDTSFKLSTKDCIYMEDLRAFTSFCLASEAIVDEAIVNYCNAYIAPLSSTNAIGRNLLVGPISTGEVYPPAPIGPDLYGPLGMPYDGSNVTIAGLADAFLGYFTRYAPNLSKVGAWPDGESSYYLPDKPGIPVGAMTVLENDSFNNITWNNVDSTWNQLNDANKFFTFDIDPQGVVAGDVFTVNDPDTNTGATYTAILGDTDTDVRNELYDQLITLRTAFIDPWIFWDISKQSGFTGDVVRLFGQNVDRLKLTCQSIYGSQLLFNQLPGETLFTWDGIERGNFQEIEWTIYKDKTDISPAYYKVYRGPLSQYNKLPIILPYVGTYSVEMKLWDLYNNISSNVKTDFICVESREVEYSGWYQARKLDYTWNSESKYIWSDYGSLWNLPIAPEVTWDEESPSLYESLDRVNAILNNFGLGTSPDFQLLNYQNDGKASFSGPYQWKNLTTGGWNDTYHLWWDMTSTTGDTPAFFQFREVEPETYLRITNLKGEVAEHYFNSTVNTLAEAAAGLNVSTNNIINKYVYNVVYDASANQMFVQAVCRYFGLHGDFKSVDIVYADGTRVCPSTGVTGAPFPTGTTGCPSLIYKKGQSMASNPTWNTAKFINNGKTLPKMTWLMFVYDKCKIPGKATPRWIIKNTTNPNIADIYFESKYLTYLFKNPGKYEITLELTDTNGNKYKKGRNILVIK*
Ga0114918_100001804	F041804	N/A	LVVEALTFKLSLDFFIYLKKYKIDVTKIRIGFFDIAINKTEYTDFNSISEMEVFYQSNYVPFDPCYVGDLVSIQLFLGASTLYDFTTEYRVSDLTGLLKITTGTSFDIQRNKQRAVLTDRQTAFVNRAVTDYRKFWNEIHRIYTTGIYSPCYAIPGWSEGTWYLNQLREVFTERNDIAEFPYDDANIIPEPPE*
Ga0114918_100001806	F042621	N/A	MESLEKEVLQWIKGDKIGDVETVKGIDNEWTVFESGGRIYTELINEFLLPIQGEPLDFRLTPAEVIKPTPKATPINTQSPIRTLFDKQKKNDTIKLNLTFPIVVPKNAIYEIISSSFDFVEVNDELESFIKDQISEDLILDSLFDSIKELVKTKYKIN*
Ga0114918_100001808	F059985	N/A	MIKIVLEPARNGVIKRVINDNHGGGKEQWTSTDVFESNDEHRNKYEYIMRFFYELCDDLSLHRGNKFEKEVIKTTTEWGSHYEPNQKEIESKIKELQAEIDLLTEWKK*
Ga0114918_100001809	F008190	N/A	MEEIIEFNFIYSKDAVKVKSFLGNIPRNIECINYMDIFNKLTKNDFYQSEPSDAVVSSYLMKQLQTVFDRDSLSIFYVLGNLNEHTVEGIKTYVESLTDKEITYNIYHSPDINVNGSAMLFENVIEFE*

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0114918_10000180

Overview

Ecosystem & Geography

Associated Families

Sequences