Scaffold Ga0102884_1038747

Overview

Basic Information

• Taxon OID: 3300009141
• Scaffold ID: Ga0102884_1038747
• Source Dataset Name: Estuarine microbial communities from the Columbia River estuary - metaG 1550A-3
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1189
• Total Scaffold Genes: 4
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 1 (25.00%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → Flavobacteriaceae (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Intertidal Zone → Estuary → Estuarine → Estuarine Microbial Communities From The Columbia River Estuary, To Analyze Effect Of Nutrient Fluxes, A Time Series

Source Dataset Sampling Location

• Location Name: Columbia River Estuary, USA
• Coordinates
  • Lat. (^o): 46.2328
  • Long. (^o): -123.878

Associated Families

Family	Category	Number of Sequences	3D Structure?
F065801	Metagenome / Metatranscriptome	127	N
F074884	Metagenome / Metatranscriptome	119	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0102884_10387472	F074884	N/A	MKEEIKSNISDKIYPNELVRDLMDINDMIQIKRSELEQLKTREEVVNATSKIVRSYYDKRKNE*
Ga0102884_10387473	F065801	N/A	MSNQEKKERKRKSIELMESIKVQEWVKNQVFNEISSLEWVELKKVGLISNLF*