Scaffold Ga0066709_100719811

Overview

Basic Information

• Taxon OID: 3300009137
• Scaffold ID: Ga0066709_100719811
• Source Dataset Name: Grasslands soil microbial communities from the Angelo Coastal Reserve, California, USA - Sample Angelo_158
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: DOE Joint Genome Institute (JGI)
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 1437
• Total Scaffold Genes: 5
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 3 (60.00%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 3 (100.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Gemmatimonadetes (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Terrestrial → Soil → Unclassified → Grasslands → Grasslands Soil → Grasslands Soil Microbial Communities From The Angelo Coastal Reserve, California, Usa

Source Dataset Sampling Location

• Location Name: USA: California: Angelo Coastal Reserve
• Coordinates
  • Lat. (^o): 39.7392
  • Long. (^o): -123.6308
  • Depth (m): 0

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004205	Metagenome / Metatranscriptome	448	Y
F006201	Metagenome / Metatranscriptome	379	Y
F052533	Metagenome / Metatranscriptome	142	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0066709_1007198112	F006201	AGGAGG	MHPEQKTLLTSALEALGPERVTRGLEATGHTWNDCFLAIALYGAPAALARQLQKRWRREHFLGTLLGVRMQVVNEVVRAWDHEEGTFRALAAEWLELNRSRVPTGPVVSA*
Ga0066709_1007198113	F004205	GGAGG	MEARVTSQSQPVRLMERMDEAKVFHGQEVRADLPNVRVTALAGSAEGQALFCNLGPLRVREIVPRGDEGPLPTNVTLEGLEVSISGTYDILNALVSANGDLRLVVDDKARVVPAARLVDAALGYRVAMGG*
Ga0066709_1007198114	F052533	GGAGG	MSEVKTKAEAHEWILTHVRQRPGCQDFSQEFRLLGKGPTWECIPTNCYDWDRASLEAFDQVVGEARRRFELEG*