Scaffold Ga0118736_10227437

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0118736_10227437

Scaffold Ga0118736_10227437

Overview

Basic Information
Taxon OID	3300009135 Open in IMG/M
Scaffold ID	Ga0118736_10227437 Open in IMG/M
Source Dataset Name	Marine sediment microbial communities from methane seeps within Hudson Canyon, US Atlantic Margin - Hudson Canyon PC-16 382 cmbsf
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	Oregon State University
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	592
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Sediment → Unclassified → Unclassified → Marine Sediment → Marine Sediment Microbial Communities From Methane Seeps Within Hudson Canyon, Us Atlantic Margin

Source Dataset Sampling Location
Location Name	Hudson Canyon, US Atlantic Margin
Coordinates	Lat. (^o)	39.54345	Long. (^o)	-72.3998	Alt. (m)		Depth (m)	541
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F045851	Metagenome / Metatranscriptome	152	Y
F046001	Metagenome / Metatranscriptome	152	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0118736_102274371	F046001	N/A	MTKIKFNTNYKTINQVTNSNKLNRPVHIMPDGLYVDNTDIETVTKILDRELIKYKLK*
Ga0118736_102274372	F045851	N/A	MTLQDHNTINELIKFYQKNRNESDYKKGIQPIEGHKIDKLMMSNHLMGAKLDLNIYSVSYTHLRAHET*

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