Basic Information | |
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Taxon OID | 3300009130 Open in IMG/M |
Scaffold ID | Ga0118729_1007134 Open in IMG/M |
Source Dataset Name | Combined Assembly of Gp0139511, Gp0139512 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Georgia Genomics Facility |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 9558 |
Total Scaffold Genes | 22 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 13 (59.09%) |
Novel Protein Genes | 5 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (60.00%) |
Associated Families | 5 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela |
Source Dataset Sampling Location | ||||||||
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Location Name | Cariaco Basin, Venezuela | |||||||
Coordinates | Lat. (o) | 10.5 | Long. (o) | -64.66 | Alt. (m) | Depth (m) | 103 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F012401 | Metagenome / Metatranscriptome | 281 | Y |
F014127 | Metagenome | 265 | Y |
F040056 | Metagenome / Metatranscriptome | 162 | Y |
F073529 | Metagenome | 120 | Y |
F105509 | Metagenome | 100 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0118729_100713411 | F012401 | N/A | MNEQPSEDEKMIDGIVSLEKAALERLTEDRLTSGSLGPEVEDMLSEAGIYWDTLNNEYFSIDNFQRETFKRLAKEYASHNDA* |
Ga0118729_100713417 | F105509 | GGAG | MKIGDMVLNDFGETAILLSEPRLVDHPEYCGPHYVADVLLTEFGCKDIWITDDVEIINEDR* |
Ga0118729_100713418 | F040056 | GGAG | MQTHADFRIGTLVRWNGDDTEGADIDELGIVIKMPGADWHGNYHIAWSTSNTVSHHSPDMVEESLYQRQMEIIG* |
Ga0118729_100713421 | F073529 | GGAGG | VKVGDLVILRSGKYNFSATEKAKWVWTEVLGVITDDRGFVDGTAEYKVYTADNKHTWSHVEDLTIVE* |
Ga0118729_10071349 | F014127 | N/A | MEEGTTMLERINNVKGRILIAGDESSWDFGFMESLEEQLKSRGTLSPRQEEVLQQVEGRWSDEALSSRANWEQDWDTDLEAKFWIALQYYRKTGYYGNIVWKYLTTEGVRCGGTPSEKEYNKLVLNKYAAGVIRNVQSESKFPVGGTAVFRTGSRTHKGKACVILKYGDTEHVTSHAKGAKPIQVLPVGAAAPIWTEERWLKKAKKRK* |
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