Scaffold Ga0118729_1004135

Overview

Basic Information

• Taxon OID: 3300009130
• Scaffold ID: Ga0118729_1004135
• Source Dataset Name: Combined Assembly of Gp0139511, Gp0139512
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 13989
• Total Scaffold Genes: 23
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 13 (56.52%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 1 (50.00%)
• Associated Families: 2

Taxonomy: All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Mediterranean phage uvDeep-CGR2-AD12-C183 (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 103

Associated Families

Family	Category	Number of Sequences	3D Structure?
F016884	Metagenome / Metatranscriptome	244	Y
F079939	Metagenome	115	N

Sequences

Protein ID	Family	RBS	Sequence
Ga0118729_10041351	F079939	N/A	EQQCIDIILENHPGDSWIYTNDRFSELDGLFVRNGVVRAVAEIKAREKPLGTYEKEMLGFNKMEAGQWASKAFRCPFYLFSYHPMNDVVAAYRITDETGQFIRKFDVSDYEQNRTSEDRQNKIVRKTAWVENKDPGLLARRGLRCIY*
Ga0118729_100413518	F016884	GGTGG	LGTDTVNLIQTLGFPVVAAAAAGVFGYKIVFYVLRNLSQEVKNLYEIIVKLIDRLNGHDKETNKLAKEVAQLRCEVASLYKCMGINPKKPVRRERDD*