Scaffold Ga0118729_1003857

Overview

Basic Information

• Taxon OID: 3300009130
• Scaffold ID: Ga0118729_1003857
• Source Dataset Name: Combined Assembly of Gp0139511, Gp0139512
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 14767
• Total Scaffold Genes: 40
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 28 (70.00%)
• Novel Protein Genes: 4
• Novel Protein Genes with Ribosome Binding Sites (RBS): 4 (100.00%)
• Associated Families: 4

Taxonomy: All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 103

Associated Families

Family	Category	Number of Sequences	3D Structure?
F005524	Metagenome	398	Y
F013357	Metagenome	272	Y
F014465	Metagenome	263	Y
F024106	Metagenome	207	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0118729_100385735	F005524	AGGA	MDIGDKVQHASTGSIGMVIDTTYELATPYQQQLCIQWEDEKALHKDSWERRDTLSIIPHEPYVYSFPD*
Ga0118729_100385737	F014465	AGGAG	MKLRGMTMIGALVRDCSMIMKIVTGYKCDQRGEWIQFAGDGATMWYPLDSFEILSTEG*
Ga0118729_100385738	F024106	GGA	MDFQVGDLITLKHHPGAPIAMVVSLDAIVFDRIMIQFFDTSRPEMAAPEHWKVVSRNENR
Ga0118729_10038579	F013357	GGAG	MARARYIPGALVEARNSKYGKGFGIIVSGPTMDTKAATQYRDLDEAQAWFSVHWFEKPGNVDSYYLRRGNGQIAMTKNQIKLVRR*