Basic Information | |
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Taxon OID | 3300009130 Open in IMG/M |
Scaffold ID | Ga0118729_1000783 Open in IMG/M |
Source Dataset Name | Combined Assembly of Gp0139511, Gp0139512 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | Georgia Genomics Facility |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 41923 |
Total Scaffold Genes | 78 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 15 (19.23%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 0 (0.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela |
Source Dataset Sampling Location | ||||||||
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Location Name | Cariaco Basin, Venezuela | |||||||
Coordinates | Lat. (o) | 10.5 | Long. (o) | -64.66 | Alt. (m) | Depth (m) | 103 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F010163 | Metagenome / Metatranscriptome | 307 | Y |
F028939 | Metagenome / Metatranscriptome | 190 | Y |
F080094 | Metagenome / Metatranscriptome | 115 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0118729_100078323 | F080094 | N/A | MKKKLPKDIKIRKFFNQQELNYIILKSVVKNENLPLMVK* |
Ga0118729_100078338 | F010163 | N/A | MFLLKITNKVFSSYNVIIQNYMKYLSYNVKTLKFVDKEIFSFYIR*IFLFIFINLYYLKVKTNYFL*YIRTSFFNNKKLISYVININISPTNTLININNIKGAPKFFYSAGMFNLQKKQKIRQPKAMILILRALLLKSKIFKTKPVAIHFNNLFSNYQSYIFKKLKSKIFIKLIVSYTFSSHNGCRLKKKKRIKIRTRTRKL* |
Ga0118729_100078366 | F028939 | N/A | MKVDKVKNKNYKLFKYNLLKLQIYSNVFFLNEIYFSNNILEQIEISMKQILKIVFEHHLYQFKILFIGFPVVSSWKQIKLIYLTNHDFISEKS* |
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