Scaffold Ga0118729_1000783

Overview

Basic Information

• Taxon OID: 3300009130
• Scaffold ID: Ga0118729_1000783
• Source Dataset Name: Combined Assembly of Gp0139511, Gp0139512
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 41923
• Total Scaffold Genes: 78
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 15 (19.23%)
• Novel Protein Genes: 3
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 3

Taxonomy: All Organisms → cellular organisms → Eukaryota → Sar → Stramenopiles → Ochrophyta → Bacillariophyta (Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 103

Associated Families

Family	Category	Number of Sequences	3D Structure?
F010163	Metagenome / Metatranscriptome	307	Y
F028939	Metagenome / Metatranscriptome	190	Y
F080094	Metagenome / Metatranscriptome	115	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0118729_100078323	F080094	N/A	MKKKLPKDIKIRKFFNQQELNYIILKSVVKNENLPLMVK*
Ga0118729_100078338	F010163	N/A	MFLLKITNKVFSSYNVIIQNYMKYLSYNVKTLKFVDKEIFSFYIR*IFLFIFINLYYLKVKTNYFL*YIRTSFFNNKKLISYVININISPTNTLININNIKGAPKFFYSAGMFNLQKKQKIRQPKAMILILRALLLKSKIFKTKPVAIHFNNLFSNYQSYIFKKLKSKIFIKLIVSYTFSSHNGCRLKKKKRIKIRTRTRKL*
Ga0118729_100078366	F028939	N/A	MKVDKVKNKNYKLFKYNLLKLQIYSNVFFLNEIYFSNNILEQIEISMKQILKIVFEHHLYQFKILFIGFPVVSSWKQIKLIYLTNHDFISEKS*