Scaffold Ga0118729_1000324

Overview

Basic Information

• Taxon OID: 3300009130
• Scaffold ID: Ga0118729_1000324
• Source Dataset Name: Combined Assembly of Gp0139511, Gp0139512
• Source Dataset Category: Metagenome
• Source Dataset Use Policy: Open
• Sequencing Center: Georgia Genomics Facility
• Sequencing Status: Permanent Draft

Scaffold Components

• Scaffold Length (bps): 67823
• Total Scaffold Genes: 90
• Total Scaffold Genes with Ribosome Binding Sites (RBS): 19 (21.11%)
• Novel Protein Genes: 2
• Novel Protein Genes with Ribosome Binding Sites (RBS): 0 (0.00%)
• Associated Families: 2

Taxonomy: Not Available (Source: )

Ecosystem & Geography

Source Dataset Ecosystem: Environmental → Aquatic → Marine → Coastal → Unclassified → Marine → Marine Water Column Microbial Communities Of The Permanently Stratified Cariaco Basin, Venezuela

Source Dataset Sampling Location

• Location Name: Cariaco Basin, Venezuela
• Coordinates
  • Lat. (^o): 10.5
  • Long. (^o): -64.66
  • Depth (m): 103

Associated Families

Family	Category	Number of Sequences	3D Structure?
F025852	Metagenome / Metatranscriptome	200	Y
F033600	Metagenome / Metatranscriptome	177	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0118729_100032463	F025852	N/A	MDIITYIDSIGRTCFGELVEQTDSLLRVKAPAMIMVTPNDAANMKVDVMPLFFTEFSSGEAPIFKYLNTQYTEVEVTISDKILVHYNAKINVKEEANPEPAAAPLSDENIPEVTLFEE*
Ga0118729_100032486	F033600	N/A	MMKGILFEDLYKYTNKYWKDVKSRHVRPTTKTLDDIAKASPATYNQISADLVPFPGDHLIEQLGSAFTNISDATYLLNQLFENPSVHLDEKIVKSANLKLQKIQDLIKSVSEDLDHDETDS*